Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNU6-1170P-201ENST00000515974 106 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 TRMT10BP1-201ENST00000519377 943 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 MIR5692A1-201ENST00000580523 69 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 AC078795.3-201ENST00000602913 472 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC138393.1-203ENST00000327086 343 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 MIR369-201ENST00000362155 70 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-128P-201ENST00000383976 107 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 SNORA75B-201ENST00000384053 137 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 RN7SKP177-201ENST00000410567 355 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 CYP4F29P-201ENST00000420685 446 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 SNAP23P1-201ENST00000433229 246 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 BRK1P2-201ENST00000442875 223 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 MRPS31P2-201ENST00000451581 518 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 RPL31P60-201ENST00000478450 367 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC027575.1-201ENST00000481064 460 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 RPS15AP34-201ENST00000487776 387 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC022493.1-201ENST00000492984 337 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC008011.1-201ENST00000545989 227 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 LRRC37A5P-203ENST00000580181 585 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC244505.7-201ENST00000599675 272 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 AC080078.3-201ENST00000605407 463 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 RMST_9.1-201ENST00000619945 193 ntBASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PCIF1Q9H4Z3 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-1188P-201ENST00000363795 107 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.480-201ENST00000384364 102 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-601P-201ENST00000384540 107 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 U8.11-201ENST00000384699 133 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 U8.12-201ENST00000384701 133 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 MTCYBP4-201ENST00000401524 249 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 MIR1290-201ENST00000408735 78 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-954P-201ENST00000411355 107 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 FABP5P15-201ENST00000453566 214 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 U8.18-201ENST00000459285 133 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC130509.1-201ENST00000464158 433 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 BTF3L4P4-201ENST00000506381 449 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 RNA5SP164-201ENST00000516533 110 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC007991.1-201ENST00000522680 631 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AP003122.3-201ENST00000526316 255 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC084851.1-201ENST00000529105 249 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC025423.5-201ENST00000550230 219 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AL157871.3-201ENST00000557231 293 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AL020997.2-201ENST00000602607 184 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AL031601.2-202ENST00000622650 282 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 AC134503.1-201ENST00000633048 54 ntBASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.09□□□□□ -1.75
PCIF1Q9H4Z3 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.09□□□□□ -1.76
PCIF1Q9H4Z3 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
PCIF1Q9H4Z3 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RNU1-64P-201ENST00000365443 163 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.482-201ENST00000384377 111 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 MIR548P-201ENST00000408336 84 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RNU2-3P-201ENST00000410144 191 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RNU2-33P-201ENST00000410344 192 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-607P-201ENST00000411283 108 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 CYCSP19-201ENST00000411715 316 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms