Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU1-33P-201ENST00000364249 162 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 SNORD115-7-201ENST00000365306 82 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 SNORA4.3-201ENST00000365564 137 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 RNU6-741P-201ENST00000383889 107 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 SNORA46-201ENST00000384762 135 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 Y_RNA.576-201ENST00000384781 102 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 MIR483-201ENST00000385070 76 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 RNU6-1158P-201ENST00000391167 107 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 RNU1-101P-201ENST00000391171 127 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL354719.1-201ENST00000406535 843 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 RNA5SP38-201ENST00000410750 119 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL606489.2-201ENST00000433886 234 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL591212.2-201ENST00000433923 257 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 Z82210.1-201ENST00000440037 231 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 ELOCP23-201ENST00000452014 332 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 RPL12P25-201ENST00000455592 494 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 RPL21P13-201ENST00000488305 481 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL160314.1-201ENST00000490836 438 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC019235.1-201ENST00000503847 207 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 SUMO2P6-201ENST00000505273 288 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 RNA5SP290-201ENST00000517133 127 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL359212.1-201ENST00000556608 614 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 MIR2682-201ENST00000580305 110 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC008521.1-201ENST00000587471 187 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC008536.2-201ENST00000607284 349 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC002076.2-201ENST00000617362 122 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC091953.5-201ENST00000622919 233 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC011155.2-201ENST00000623202 216 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
NKX3-1Q99801 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
NKX3-1Q99801 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
NKX3-1Q99801 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 FAM35CP-201ENST00000554755 2470 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 AC008264.2-201ENST00000610193 3731 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 API5P2-201ENST00000397055 1498 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 FTLP6-201ENST00000355274 422 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 RNU6-517P-201ENST00000384362 110 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 MIR454-201ENST00000390180 115 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 RPL17P50-201ENST00000396131 546 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
NKX3-1Q99801 MRPL50P2-201ENST00000416821 482 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 RPL7P46-201ENST00000425129 740 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 CALM2P2-201ENST00000428512 440 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 HMGB1P27-201ENST00000431429 603 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 DDX3P2-201ENST00000446138 111 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AC091179.1-201ENST00000461606 579 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AC006483.1-201ENST00000487308 313 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 RPL39P36-201ENST00000490784 156 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AC139453.3-201ENST00000493276 369 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AC092436.1-201ENST00000506450 503 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 ATP5F1P5-201ENST00000526403 760 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AP001893.2-201ENST00000526949 202 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 HIGD1AP1-201ENST00000550979 275 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AC034105.3-201ENST00000565294 442 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 MTATP6P3-201ENST00000581686 676 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 MIR5195-201ENST00000583555 115 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AC006504.3-201ENST00000586818 523 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 AC012507.3-201ENST00000603556 477 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 MIR15A-201ENST00000607334 83 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 AC012409.4-201ENST00000612923 249 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 MIR6076-201ENST00000617521 113 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.72□□□□□ -1.97
NKX3-1Q99801 AL137003.2-201ENST00000606924 2538 ntBASIC2.72□□□□□ -1.97
NKX3-1Q99801 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.71□□□□□ -1.97
NKX3-1Q99801 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.97
NKX3-1Q99801 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.71□□□□□ -1.98
NKX3-1Q99801 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
NKX3-1Q99801 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
NKX3-1Q99801 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 Y_RNA.245-201ENST00000364493 95 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNU4-48P-201ENST00000365559 182 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 199.5 ms