Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU2-62P-201ENST00000410868 191 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC098592.1-201ENST00000419352 333 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 MTCO2P17-201ENST00000424336 677 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AL161651.1-201ENST00000440882 223 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC233279.1-201ENST00000455300 423 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 RPS3P1-201ENST00000456781 192 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC023141.11-201ENST00000508864 202 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 MRPS36P3-201ENST00000519284 130 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC006199.1-201ENST00000548728 219 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 ARL2BPP2-201ENST00000550907 489 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 RPS3AP4-201ENST00000555161 764 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC023824.2-201ENST00000566185 400 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 MIR3199-1-201ENST00000582434 88 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 MIR5194-201ENST00000582634 120 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AL358072.1-201ENST00000604156 575 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AP000860.1-201ENST00000605250 559 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 AC011939.3-201ENST00000613686 466 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 HMGB1P24-202ENST00000615653 685 ntBASIC2.77□□□□□ -1.97
CCDC43Q96MW1 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC43Q96MW1 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 RNU6-809P-201ENST00000384461 107 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 RNU6-220P-201ENST00000390919 107 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 RNU2-36P-201ENST00000410361 191 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 RAC1P6-201ENST00000423911 575 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AL513328.1-201ENST00000446460 224 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 RPL39P36-201ENST00000490784 156 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 RNU6-415P-201ENST00000516252 97 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 RNU6-201P-201ENST00000517100 61 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AC025881.1-201ENST00000518851 512 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AP003461.1-201ENST00000528866 78 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 ELOCP32-201ENST00000548625 324 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AL121821.2-201ENST00000556081 394 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AC008121.1-201ENST00000603244 268 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AL589994.2-201ENST00000621124 579 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 AP002791.1-201ENST00000623291 381 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 U6.99-201ENST00000637524 83 ntBASIC2.76□□□□□ -1.97
CCDC43Q96MW1 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC43Q96MW1 MTND4P35-201ENST00000604257 1375 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 RNU6-1214P-201ENST00000363650 109 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 RNU6-188P-201ENST00000364207 107 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 U3.12-201ENST00000364498 214 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 RNY4P16-201ENST00000364768 94 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 RPS12P24-201ENST00000412619 387 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 RPS27AP14-201ENST00000422868 454 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AL353777.1-201ENST00000425552 326 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 RPL22P17-201ENST00000438729 315 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 COX6CP12-201ENST00000446748 202 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC133134.1-201ENST00000466800 359 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 RNA5SP24-201ENST00000516478 95 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 RNU6-143P-201ENST00000516942 93 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 SNORD19.2-201ENST00000516978 73 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 ISCA1P3-201ENST00000577104 373 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 BNIP3P9-201ENST00000603714 553 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC091152.3-201ENST00000604227 325 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 uc_338.12-201ENST00000616344 181 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 AC092192.1-201ENST00000633154 1018 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC43Q96MW1 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.75□□□□□ -1.97
CCDC43Q96MW1 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC43Q96MW1 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC43Q96MW1 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC43Q96MW1 MIR449A-201ENST00000362113 91 ntBASIC2.74□□□□□ -1.97
CCDC43Q96MW1 RNA5SP456-201ENST00000364002 114 ntBASIC2.74□□□□□ -1.97
CCDC43Q96MW1 SNORD114-30-201ENST00000364448 72 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms