Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 MAPK10-349ENST00000641767 3661 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AL731532.2-201ENST00000623542 1953 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.461-201ENST00000384263 103 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AL645927.1-201ENST00000396783 406 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 MIR1302-6-201ENST00000408466 90 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 BX510359.2-201ENST00000417920 305 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 RPL23AP22-201ENST00000437556 453 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AC009296.1-201ENST00000443146 155 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 CEACAMP7-201ENST00000444105 496 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AL590664.1-201ENST00000448065 339 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AC231760.1-201ENST00000498002 260 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 RNA5SP392-201ENST00000516905 112 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AC109329.1-201ENST00000518744 317 ntBASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC140Q96MF4 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC007390.2-201ENST00000606229 3803 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RN7SKP104-201ENST00000362605 328 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.307-201ENST00000365022 117 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RNU6-398P-201ENST00000384143 109 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.504-201ENST00000384481 104 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 MIR32-201ENST00000384965 70 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 MT-TG-201ENST00000387429 68 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RPL21P75-201ENST00000396599 483 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RPL21P28-201ENST00000401418 483 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AL358453.1-201ENST00000422522 250 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AL590556.1-201ENST00000423231 483 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 NUTF2P3-201ENST00000448540 384 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RPL21P11-201ENST00000461458 483 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RPL21P39-201ENST00000463605 483 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC087190.1-201ENST00000484462 480 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC107032.1-201ENST00000485945 480 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC132942.1-201ENST00000486753 483 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RN7SL283P-201ENST00000489055 303 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC093591.1-201ENST00000491435 481 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC104564.1-201ENST00000493028 407 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RPL21P16-201ENST00000495531 483 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 MTND4LP22-201ENST00000508209 276 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 OR51K1P-201ENST00000510214 950 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.719-201ENST00000517156 106 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC007375.1-201ENST00000554513 578 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 CYCSP40-201ENST00000575927 294 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC103858.2-201ENST00000621471 543 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AL672167.1-204ENST00000641875 3017 ntBASIC3.79□□□□□ -1.8
CCDC140Q96MF4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
CCDC140Q96MF4 AC007656.2-201ENST00000624902 4547 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 AC110491.1-201ENST00000562191 2010 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 USP8-204ENST00000425032 3559 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 RNU1-76P-201ENST00000362903 159 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.288-201ENST00000364854 92 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.376-201ENST00000365638 108 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC140Q96MF4 RPL12P3-201ENST00000440080 396 ntBASIC3.78□□□□□ -1.8
CCDC140Q96MF4 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms