Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AF131216.2-201ENST00000512316 564 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 RNU6-678P-201ENST00000516832 109 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 HMGN1P28-201ENST00000521340 364 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC087241.2-201ENST00000535801 324 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC012435.1-202ENST00000568772 240 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC012468.1-201ENST00000604888 430 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 ATP1B3P1-201ENST00000605365 821 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC027807.2-201ENST00000616099 408 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 uc_338.12-201ENST00000616344 181 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC093591.3-201ENST00000634516 308 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL137003.2-201ENST00000606924 2538 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC022336.2-201ENST00000568966 2538 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 UBE2L2-201ENST00000254302 429 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 OR5J1P-201ENST00000313544 939 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AL596028.1-201ENST00000326971 197 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 RNU6-501P-201ENST00000364072 100 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 SNORA6-201ENST00000384033 151 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 RNU6-533P-201ENST00000384144 107 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AL122016.1-201ENST00000403365 367 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 RNU6-920P-201ENST00000410926 92 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 MTND1P23-201ENST00000416931 372 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 USP9YP27-201ENST00000418455 438 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 BPY2DP-201ENST00000422208 265 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AL133217.1-201ENST00000450980 425 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC013267.1-201ENST00000458227 267 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 RPS3AP22-201ENST00000488297 769 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 RNA5SP290-201ENST00000517133 127 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 RNA5SP165-201ENST00000517142 115 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 SNORA70.24-201ENST00000517233 118 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AP003467.2-201ENST00000520175 319 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC009127.3-201ENST00000570531 403 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 RPS3AP23-202ENST00000574601 686 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 MIR548AB-201ENST00000584917 84 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 HMGN1P30-201ENST00000589286 268 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AL451007.1-201ENST00000595491 289 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 KC877982.1-201ENST00000602313 470 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC067747.1-201ENST00000608026 250 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AC239868.4-201ENST00000608318 671 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 MIR6840-201ENST00000611937 71 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 AP003399.1-201ENST00000637534 361 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC54Q8NEL0 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC004944.1-201ENST00000517807 3059 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC092104.1-201ENST00000497346 1441 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 Y_RNA.560-201ENST00000384689 102 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 MIR888-201ENST00000401186 77 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 FCF1P10-201ENST00000407590 479 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 Y_RNA.608-201ENST00000410647 95 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 RNU2-49P-201ENST00000410666 184 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC098614.2-201ENST00000426040 255 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 HMGB3P12-201ENST00000438745 556 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 RPS3AP12-201ENST00000443616 753 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AL590365.1-201ENST00000450788 243 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 RAP1BP2-201ENST00000478270 544 ntBASIC2.12□□□□□ -2.07
CCDC54Q8NEL0 RPS3AP14-201ENST00000483907 780 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms