Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 MAPK10-362ENST00000641864 4484 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AL590240.1-201ENST00000334118 313 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-1252P-201ENST00000363054 104 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 MIR591-201ENST00000385290 95 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 MIR550A3-201ENST00000390735 95 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 RNA5SP252-201ENST00000391131 119 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 MIR450B-201ENST00000401182 78 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 TANK-203ENST00000402568 878 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 RAP1BP3-201ENST00000407180 549 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 TEX41-205ENST00000431734 529 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AL132765.1-201ENST00000434165 553 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 DHFRP3-201ENST00000455595 559 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 RPL23AP24-201ENST00000458203 385 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 RNU7-138P-201ENST00000459479 64 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 HMGN2P13-201ENST00000476476 274 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AC110768.1-201ENST00000509222 400 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 RNU7-30P-201ENST00000516835 62 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-323P-201ENST00000521915 107 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AP000889.2-201ENST00000532684 490 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AC063950.1-201ENST00000552036 308 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AC005261.5-201ENST00000596280 355 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AC087385.3-201ENST00000620477 187 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 AC005858.4-201ENST00000623191 700 ntBASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28AQ8IWP9 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 Y_RNA.142-201ENST00000363491 102 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 SNORD81.2-201ENST00000365153 76 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 DYNLT3P1-201ENST00000378574 347 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 FAR2P2-201ENST00000413041 594 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AL714022.1-201ENST00000439897 151 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 RPL23AP93-201ENST00000440847 484 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 PPP1R2P5-201ENST00000457256 603 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC092324.1-201ENST00000468671 324 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC034236.1-201ENST00000469891 373 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 RPS29P20-201ENST00000489592 171 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-256P-201ENST00000516747 97 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-711P-201ENST00000517255 106 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 SCOCP1-201ENST00000554676 349 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 LINC00933-203ENST00000559812 219 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC026464.5-201ENST00000562497 722 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 MIR4436B2-201ENST00000581415 91 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 MIR4270-201ENST00000581799 70 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 MIR4436B1-201ENST00000583272 91 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC091135.1-201ENST00000585943 307 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 NUTF2P8-201ENST00000604593 363 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 LARP7P1-201ENST00000605576 316 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC087045.1-201ENST00000605856 382 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 FAM157A-202ENST00000615155 405 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AP005019.3-201ENST00000620418 560 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC099654.5-201ENST00000636479 350 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 AC110491.1-201ENST00000562191 2010 ntBASIC3.32□□□□□ -1.88
CCDC28AQ8IWP9 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AC012618.3-205ENST00000637896 1496 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 RNU1-75P-201ENST00000347264 129 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 Z98749.2-208ENST00000381646 500 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-128P-201ENST00000383976 107 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AL109941.1-201ENST00000401925 229 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-55P-201ENST00000411092 107 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-954P-201ENST00000411355 107 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 VN1R36P-201ENST00000414936 291 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 NCOR1P3-201ENST00000420479 303 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 PGBD4P6-201ENST00000421501 610 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 BPY2DP-201ENST00000422208 265 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AL353678.1-201ENST00000422735 741 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms