Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC010099.1-201ENST00000455434 375 ntBASIC3.09□□□□□ -1.91
NPHP3Q7Z494 AC093534.1-201ENST00000504977 132 ntBASIC3.09□□□□□ -1.91
NPHP3Q7Z494 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.09□□□□□ -1.91
NPHP3Q7Z494 MTND4LP18-201ENST00000526864 291 ntBASIC3.09□□□□□ -1.91
NPHP3Q7Z494 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.09□□□□□ -1.91
NPHP3Q7Z494 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
NPHP3Q7Z494 NUTF2P8-201ENST00000604593 363 ntBASIC3.09□□□□□ -1.91
NPHP3Q7Z494 AC103710.2-201ENST00000609912 942 ntBASIC3.09□□□□□ -1.91
NPHP3Q7Z494 AC090132.2-201ENST00000615881 347 ntBASIC3.09□□□□□ -1.91
NPHP3Q7Z494 AC104010.1-201ENST00000616889 150 ntBASIC3.09□□□□□ -1.91
NPHP3Q7Z494 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
NPHP3Q7Z494 AC009902.3-201ENST00000606235 2172 ntBASIC3.09□□□□□ -1.92
NPHP3Q7Z494 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 RNU4-21P-201ENST00000362802 126 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 RNU5E-8P-201ENST00000363502 116 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 Y_RNA.226-201ENST00000364337 114 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AL023284.1-201ENST00000403956 276 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 CYCSP46-201ENST00000423569 204 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC098826.1-201ENST00000433943 471 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 TAAR7P-201ENST00000436141 242 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC118469.1-201ENST00000442943 488 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 BMI1P1-201ENST00000445879 941 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 TPT1P14-201ENST00000448018 505 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 TTC39CP1-201ENST00000512513 755 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 RNU6-1256P-201ENST00000516539 103 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 MIR5697-201ENST00000578045 78 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 MIR3670-2-201ENST00000582974 65 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 MIR3670-1-201ENST00000584160 65 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 MIR3670-3-201ENST00000584855 65 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 BNIP3P8-201ENST00000597863 560 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC110760.3-201ENST00000598794 467 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC013553.2-201ENST00000604244 589 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 Z94722.1-201ENST00000604328 474 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AL355472.4-201ENST00000610233 626 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 MIR3670-4-201ENST00000612260 65 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AL603758.1-201ENST00000618654 241 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 OR5H6-203ENST00000642105 978 ntBASIC3.08□□□□□ -1.92
NPHP3Q7Z494 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
NPHP3Q7Z494 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 Y_RNA.46-201ENST00000362695 102 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 RNU6-637P-201ENST00000384050 107 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 MIR325-201ENST00000385260 98 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 SNORA11.4-201ENST00000408823 129 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AC008850.1-201ENST00000427546 362 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 DPPA2P1-201ENST00000428060 556 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AC092427.1-202ENST00000430569 476 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AP000705.1-201ENST00000454567 350 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AP1S2P1-201ENST00000457344 379 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AP000797.1-201ENST00000478870 387 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 RNU6-840P-201ENST00000517275 65 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AC004486.1-201ENST00000546846 233 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AC012414.6-201ENST00000568241 401 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 MIR4498-201ENST00000577599 66 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 TPMTP1-201ENST00000592307 737 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AC012065.4-201ENST00000602445 679 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 U73023.1-201ENST00000603134 700 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 AL391813.2-201ENST00000609113 322 ntBASIC3.07□□□□□ -1.92
NPHP3Q7Z494 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.07□□□□□ -1.92
NPHP3Q7Z494 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 SNORA25.6-201ENST00000364121 118 ntBASIC3.06□□□□□ -1.92
NPHP3Q7Z494 RNU6-533P-201ENST00000384144 107 ntBASIC3.06□□□□□ -1.92
NPHP3Q7Z494 RNU6-516P-201ENST00000411381 104 ntBASIC3.06□□□□□ -1.92
NPHP3Q7Z494 NDUFB4P7-201ENST00000423198 363 ntBASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AC055855.1-201ENST00000489563 579 ntBASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AC135721.1-201ENST00000497954 479 ntBASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AL356057.1-201ENST00000533798 831 ntBASIC3.06□□□□□ -1.92
NPHP3Q7Z494 SETP2-201ENST00000553886 926 ntBASIC3.06□□□□□ -1.92
NPHP3Q7Z494 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.06□□□□□ -1.92
NPHP3Q7Z494 ZNF519P3-201ENST00000557158 1032 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms