Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC007256.1-201ENST00000392253 2765 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AC092326.2-201ENST00000624772 1561 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AL139276.1-201ENST00000311910 1001 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 NACAP2-201ENST00000318548 624 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 Y_RNA.166-201ENST00000363730 102 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 RNU6-641P-201ENST00000384006 107 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 RNU2-36P-201ENST00000410361 191 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 RNA5SP229-201ENST00000410809 99 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 SSXP4-201ENST00000451349 245 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 MRPS17P3-201ENST00000465453 385 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 RPS15AP36-201ENST00000492022 382 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 EIF4EP3-201ENST00000498782 656 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AL359273.1-201ENST00000510918 627 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 SUB1P1-201ENST00000524415 382 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AC010525.2-201ENST00000590920 195 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 SRGNP1-201ENST00000603392 451 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AC087045.1-201ENST00000605856 382 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 AL450472.3-201ENST00000615578 367 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 uc_338.11-201ENST00000619132 160 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
VPS53Q5VIR6 OR4G1P-203ENST00000641984 1631 ntBASIC3.95□□□□□ -1.78
VPS53Q5VIR6 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC118273.1-201ENST00000525324 3006 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 RNU6-845P-201ENST00000362578 103 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 RNU6-960P-201ENST00000364056 120 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AL357075.1-201ENST00000404107 726 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 MIR1290-201ENST00000408735 78 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 RNU6-193P-201ENST00000410977 107 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC007390.1-201ENST00000415722 356 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 TXNP1-201ENST00000441872 371 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AL162389.1-201ENST00000449233 177 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC026427.2-201ENST00000506228 536 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 RN7SKP219-201ENST00000516825 296 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 RNU6-1092P-201ENST00000516955 87 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC123904.3-201ENST00000547218 814 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AL356055.1-201ENST00000602528 446 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 TUG1_2.1-201ENST00000614234 87 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 MIR8058-201ENST00000615737 89 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AC009233.1-201ENST00000616477 371 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 SNHG22-203ENST00000617833 660 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 AL136221.1-201ENST00000621449 509 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 U6.98-201ENST00000637157 84 ntBASIC3.94□□□□□ -1.78
VPS53Q5VIR6 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS53Q5VIR6 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 ZNF807-201ENST00000328088 1707 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 Y_RNA.142-201ENST00000363491 102 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 SNORA62.1-201ENST00000364287 154 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 RNA5SP44-201ENST00000410446 133 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 RPL21P24-201ENST00000413752 448 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 UBE2FP1-201ENST00000416536 447 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 MTCYBP8-201ENST00000422855 651 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 ARF4P2-201ENST00000430209 526 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 SNRPEP4-201ENST00000435815 279 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 MTCO3P45-201ENST00000443036 613 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 SCARNA20.6-201ENST00000517251 106 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 AP005435.4-201ENST00000529514 284 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 BNIP3P6-201ENST00000549284 499 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 AC013553.2-201ENST00000604244 589 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms