Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 ZNF92P2-201ENST00000600543 1059 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC080013.4-201ENST00000607624 649 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AP000648.3-201ENST00000623539 4507 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 MIR506-201ENST00000384998 124 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 SNORA46.1-201ENST00000391069 153 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 RNA5SP465-201ENST00000391195 109 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 RPL7L1P10-201ENST00000427790 463 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC092634.2-201ENST00000428146 1010 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 RPL26P6-201ENST00000440913 438 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 RNU7-23P-201ENST00000459465 62 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 RPS27P21-201ENST00000486977 252 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 SCARNA11.3-201ENST00000517276 130 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC008127.2-201ENST00000549925 1075 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC020658.4-201ENST00000613987 684 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 SNRPEP3-201ENST00000338402 276 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 RNA5SP240-201ENST00000365355 128 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 OR1L1-202ENST00000373686 1083 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-741P-201ENST00000383889 107 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 MIR325-201ENST00000385260 98 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 MIR320A-201ENST00000385302 82 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AL355615.1-201ENST00000406187 641 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 USP12PX-201ENST00000432383 1057 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 Z82210.1-201ENST00000440037 231 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AC023790.1-201ENST00000482174 347 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 FABP5P5-201ENST00000515537 406 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 NDUFS5P6-201ENST00000529136 295 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AC118942.1-201ENST00000529674 1035 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 HSBP1P1-201ENST00000555205 166 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 MIR4287-201ENST00000579398 78 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AL450270.1-201ENST00000606160 391 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AC007349.4-201ENST00000608114 532 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 AC091895.1-201ENST00000624494 256 ntBASIC1.59□□□□□ -2.15
CCDC88AQ3V6T2 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.59□□□□□ -2.16
CCDC88AQ3V6T2 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.59□□□□□ -2.16
CCDC88AQ3V6T2 DDX10P1-201ENST00000448545 1933 ntBASIC1.59□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-216P-201ENST00000363282 104 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 SNORD65C-201ENST00000390962 71 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AL033519.2-201ENST00000403958 392 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-920P-201ENST00000410926 92 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AL356379.1-201ENST00000414105 126 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 SFR1P2-201ENST00000421841 730 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 RPL30P5-201ENST00000494923 336 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC007151.1-201ENST00000572774 483 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 ANKRD36BP2-206ENST00000575193 1245 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC040174.2-201ENST00000602701 465 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC097468.3-201ENST00000607956 456 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 HMGB1P24-202ENST00000615653 685 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC098657.3-201ENST00000620434 263 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC010329.5-201ENST00000623497 2174 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-115P-201ENST00000364310 107 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-1078P-201ENST00000364522 103 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 MTND4LP7-201ENST00000431728 294 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 MIR3609-201ENST00000582661 80 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 HMGN2P15-201ENST00000585707 270 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AL671309.1-201ENST00000603750 544 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 OR4H6P-202ENST00000603819 340 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AC004852.3-201ENST00000614131 326 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 AP003399.1-201ENST00000637534 361 ntBASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
CCDC88AQ3V6T2 SNORD114-27-201ENST00000363766 70 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 RNU1-133P-201ENST00000364867 167 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-481P-201ENST00000384194 107 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 MIR888-201ENST00000401186 77 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 MIR1285-1-201ENST00000408593 84 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 RN7SKP51-201ENST00000410781 304 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-1328P-201ENST00000410938 106 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 ZNF90P2-204ENST00000419323 1075 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-202P-201ENST00000515998 96 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 AC004067.1-201ENST00000608733 700 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 AC090132.2-201ENST00000615881 347 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms