Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 YME1L1P1-201ENST00000429435 297 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 HSPD1P21-201ENST00000436541 245 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 PRPS1P1-201ENST00000445305 876 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AC009237.8-201ENST00000445492 379 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 HMGN2P7-201ENST00000456186 273 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RNU7-167P-201ENST00000459160 62 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RPL21P41-201ENST00000459863 264 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RPL31P60-201ENST00000478450 367 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RNU2-69P-201ENST00000516061 100 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-864P-201ENST00000516256 108 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 Y_RNA.691-201ENST00000516611 103 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AC026403.1-201ENST00000518938 295 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AC090136.1-201ENST00000520009 240 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AC090115.3-201ENST00000553218 849 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 MIR5692A1-201ENST00000580523 69 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 MIR5187-201ENST00000583479 76 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AC008739.3-201ENST00000603262 127 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AC092747.3-201ENST00000603769 301 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RNU1-30P-201ENST00000606575 163 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.84
PTCHD3Q3KNS1 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.59□□□□□ -1.84
PTCHD3Q3KNS1 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 SNORD6-201ENST00000365444 73 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 Y_RNA.356-201ENST00000365475 113 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AL122016.1-201ENST00000403365 367 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 RNA5SP129-201ENST00000410276 118 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 BX682237.1-201ENST00000415016 335 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC093578.1-201ENST00000415219 368 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AL353678.1-201ENST00000422735 741 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 RNU7-66P-201ENST00000459469 62 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC083904.1-201ENST00000487828 231 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC104619.4-201ENST00000510773 249 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 RNU2-58P-201ENST00000516403 183 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 RNA5SP471-201ENST00000516971 106 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 RNA5SP291-201ENST00000517222 105 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC105029.1-201ENST00000520250 669 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC005668.1-201ENST00000571142 476 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC005498.1-201ENST00000592125 465 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC007687.1-201ENST00000602704 304 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC106900.2-201ENST00000604994 317 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AL132765.2-201ENST00000610812 351 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC022418.1-201ENST00000624118 445 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 TPTEP1-208ENST00000636884 213 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AP000553.6-201ENST00000641242 118 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC009093.8-201ENST00000641769 292 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 RPS4XP5-202ENST00000449995 1334 ntBASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.58□□□□□ -1.84
PTCHD3Q3KNS1 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 RNU4-73P-201ENST00000363164 141 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 Y_RNA.212-201ENST00000364177 102 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 Y_RNA.301-201ENST00000364990 103 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 SNORA4.3-201ENST00000365564 137 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AL139039.1-201ENST00000401900 692 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 RPL23AP69-201ENST00000431134 458 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC092001.1-201ENST00000453012 261 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 CEACAMP4-201ENST00000457676 421 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 DYNLL1P5-201ENST00000467158 270 ntBASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.57□□□□□ -1.84
PTCHD3Q3KNS1 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms