Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.51□□□□□ -1.69
SF3A1Q15459 AC128713.1-201ENST00000471495 306 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RPS29P20-201ENST00000489592 171 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AL132838.2-201ENST00000492041 314 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 RPL7P47-201ENST00000497299 556 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.51□□□□□ -1.69
SF3A1Q15459 AC069113.1-201ENST00000517763 267 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.51□□□□□ -1.69
SF3A1Q15459 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SF3A1Q15459 AC087241.2-201ENST00000535801 324 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.51□□□□□ -1.69
SF3A1Q15459 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
SF3A1Q15459 AC025884.1-201ENST00000556034 378 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.51□□□□□ -1.69
SF3A1Q15459 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 U2.21-201ENST00000637295 81 ntBASIC4.51□□□□□ -1.69
SF3A1Q15459 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SF3A1Q15459 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.51□□□□□ -1.69
SF3A1Q15459 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
SF3A1Q15459 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SF3A1Q15459 MTND5P7-201ENST00000413558 1798 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SF3A1Q15459 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SF3A1Q15459 RNU6-778P-201ENST00000363269 103 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 SNORD113-7-201ENST00000363762 77 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 Y_RNA.414-201ENST00000384011 101 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 MIR34A-201ENST00000385130 110 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 RPL5P18-201ENST00000406671 891 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 NDUFS5P4-201ENST00000412983 318 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 RPL7P10-201ENST00000417407 739 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 PGBD4P6-201ENST00000421501 610 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 MTATP6P7-201ENST00000453315 681 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 AL031183.1-201ENST00000457667 207 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 HMGN2P13-201ENST00000476476 274 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 AC011005.2-201ENST00000487324 359 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.5□□□□□ -1.69
SF3A1Q15459 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.5□□□□□ -1.69
SF3A1Q15459 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.5□□□□□ -1.69
SF3A1Q15459 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.5□□□□□ -1.69
SF3A1Q15459 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.5□□□□□ -1.69
SF3A1Q15459 YPEL5P3-201ENST00000547227 352 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 AC107016.1-201ENST00000550463 337 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 AL645944.1-201ENST00000603857 493 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 NUTF2P8-201ENST00000604593 363 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 AC091167.4-201ENST00000605079 184 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 AL355073.2-201ENST00000612106 557 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.5□□□□□ -1.69
SF3A1Q15459 AC006504.1-201ENST00000562493 3666 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 SRP72P2-201ENST00000344851 1979 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SF3A1Q15459 HSPA8P1-201ENST00000425843 1833 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SF3A1Q15459 MTND4P12-201ENST00000498999 1377 ntBASIC4.5□□□□□ -1.69
SF3A1Q15459 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
SF3A1Q15459 U3.12-201ENST00000364498 214 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 MIR23B-201ENST00000384832 97 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 RNU2-3P-201ENST00000410144 191 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 NDUFB4P5-201ENST00000415445 361 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.49□□□□□ -1.69
SF3A1Q15459 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.49□□□□□ -1.69
SF3A1Q15459 NDUFA5P4-201ENST00000436704 385 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 USP9YP8-201ENST00000441913 500 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.49□□□□□ -1.69
SF3A1Q15459 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.49□□□□□ -1.69
SF3A1Q15459 MRPS31P2-201ENST00000451581 518 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 RNU7-170P-201ENST00000459303 61 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC087884.1-201ENST00000469738 328 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 RNU4-49P-201ENST00000516080 140 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 RNA5SP143-201ENST00000516936 115 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 RNU6-273P-201ENST00000516937 96 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 RNU6-1183P-201ENST00000517054 60 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 RNA5SP179-201ENST00000517284 121 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC090136.1-201ENST00000520009 240 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC087369.1-201ENST00000520775 996 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.49□□□□□ -1.69
SF3A1Q15459 RNU6-323P-201ENST00000521915 107 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.49□□□□□ -1.69
SF3A1Q15459 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SF3A1Q15459 CYCSP27-201ENST00000527643 293 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC106785.1-201ENST00000565935 262 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC005668.1-201ENST00000571142 476 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC005498.1-201ENST00000592125 465 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 AC020914.4-201ENST00000597690 277 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SF3A1Q15459 Y_RNA.804-201ENST00000615262 101 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 RMST_4.1-201ENST00000616886 107 ntBASIC4.49□□□□□ -1.69
SF3A1Q15459 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
SF3A1Q15459 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.49□□□□□ -1.69
SF3A1Q15459 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SF3A1Q15459 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SF3A1Q15459 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SF3A1Q15459 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.49□□□□□ -1.69
SF3A1Q15459 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.48□□□□□ -1.69
SF3A1Q15459 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.48□□□□□ -1.69
SF3A1Q15459 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SF3A1Q15459 Y_RNA.324-201ENST00000365165 102 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 MIR591-201ENST00000385290 95 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 RNU4-6P-201ENST00000410804 122 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 CYCSP33-201ENST00000414485 327 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 AL356095.1-201ENST00000417217 199 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms