Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.54□□□□□ -1.68
COL8A1P27658 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.54□□□□□ -1.68
COL8A1P27658 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.54□□□□□ -1.68
COL8A1P27658 MIR3160-1-201ENST00000577972 85 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.54□□□□□ -1.68
COL8A1P27658 LARP7P3-201ENST00000579888 337 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 AC006115.2-201ENST00000596823 202 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 AC005296.1-201ENST00000616145 209 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 AC090617.7-201ENST00000623952 126 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 U6.95-201ENST00000636931 70 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 MIR3914-2-201ENST00000637339 95 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 MUC2-202ENST00000613187 4845 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
COL8A1P27658 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
COL8A1P27658 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.53□□□□□ -1.68
COL8A1P27658 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.53□□□□□ -1.68
COL8A1P27658 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 UBE2L2-201ENST00000254302 429 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 RNU6-968P-201ENST00000384076 107 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 RNU6-1248P-201ENST00000391096 64 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 SNORA57.1-201ENST00000391227 145 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.53□□□□□ -1.68
COL8A1P27658 AC099670.2-201ENST00000435130 321 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 RPS29P24-201ENST00000486345 171 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 RPL36AP41-201ENST00000493820 306 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.53□□□□□ -1.68
COL8A1P27658 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.53□□□□□ -1.68
COL8A1P27658 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.53□□□□□ -1.68
COL8A1P27658 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.53□□□□□ -1.68
COL8A1P27658 MIR4715-201ENST00000584117 79 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.53□□□□□ -1.68
COL8A1P27658 AC133552.1-201ENST00000569988 4007 ntBASIC4.53□□□□□ -1.68
COL8A1P27658 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.53□□□□□ -1.68
COL8A1P27658 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.53□□□□□ -1.68
COL8A1P27658 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL8A1P27658 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL8A1P27658 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL8A1P27658 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.52□□□□□ -1.69
COL8A1P27658 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.52□□□□□ -1.69
COL8A1P27658 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC4.52□□□□□ -1.69
COL8A1P27658 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
COL8A1P27658 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 U3.3-201ENST00000362986 216 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 SNORD14B-201ENST00000364533 90 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 RNU6-1145P-201ENST00000384246 107 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 RNA5SP113-201ENST00000410486 84 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 AL158823.1-201ENST00000418441 478 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 BPY2DP-201ENST00000422208 265 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 DDX39BP1-205ENST00000422507 192 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC4.52□□□□□ -1.69
COL8A1P27658 AL353705.4-201ENST00000449661 238 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 RPL23AP49-201ENST00000492925 468 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 RNU6-377P-201ENST00000515965 102 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.52□□□□□ -1.69
COL8A1P27658 MIR4782-201ENST00000577987 79 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.52□□□□□ -1.69
COL8A1P27658 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.52□□□□□ -1.69
COL8A1P27658 AL133481.2-203ENST00000607558 139 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC4.52□□□□□ -1.69
COL8A1P27658 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.52□□□□□ -1.69
COL8A1P27658 AC015813.6-201ENST00000624409 5808 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
COL8A1P27658 ADAM24P-201ENST00000398655 2101 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 SCARNA15-201ENST00000607520 4325 ntBASIC4.52□□□□□ -1.69
COL8A1P27658 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms