Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXD4P09016 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXD4P09016 MTCO2P11-201ENST00000431069 680 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RPL35AP22-201ENST00000436855 335 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXD4P09016 AL590664.1-201ENST00000448065 339 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RNA5SP310-201ENST00000459084 116 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 MTCO2P29-201ENST00000465212 189 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXD4P09016 HMGB1P29-201ENST00000505659 499 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD4P09016 AF213884.2-201ENST00000510417 903 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AC114797.1-201ENST00000514003 728 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RN7SKP43-201ENST00000516173 320 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 SNORA70.16-201ENST00000516390 95 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RNU6-445P-201ENST00000516949 107 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RNU6-56P-201ENST00000516986 93 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RNU6-64P-201ENST00000517119 105 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.71□□□□□ -1.98
HOXD4P09016 OR5G4P-201ENST00000525251 760 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AC124947.2-202ENST00000552735 133 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 GTF3AP2-201ENST00000557014 266 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXD4P09016 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.71□□□□□ -1.98
HOXD4P09016 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXD4P09016 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXD4P09016 MIR3921-201ENST00000577308 85 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AL136363.1-201ENST00000605349 337 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AC007684.1-201ENST00000609671 477 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AC103710.2-201ENST00000609912 942 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AC092794.1-201ENST00000612734 582 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AC124864.2-201ENST00000624736 186 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AL157786.1-207ENST00000627771 695 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 SEPT14P19-203ENST00000633205 211 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 MIR6863-201ENST00000636112 90 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.71□□□□□ -1.98
HOXD4P09016 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD4P09016 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXD4P09016 MAPK10-322ENST00000641485 4530 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
HOXD4P09016 AC108206.1-201ENST00000570186 4159 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD4P09016 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD4P09016 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD4P09016 FTLP6-201ENST00000355274 422 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 RNU1-101P-201ENST00000391171 127 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AL109755.1-201ENST00000401791 649 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AL590004.2-201ENST00000404787 371 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 MIR1290-201ENST00000408735 78 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 RNA5SP274-201ENST00000410484 108 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 RNU4-55P-201ENST00000410731 137 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD4P09016 AC090774.1-201ENST00000435925 246 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AC005094.1-201ENST00000440420 368 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AL136380.1-201ENST00000447970 162 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXD4P09016 RPS15AP36-201ENST00000492022 382 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD4P09016 RNA5SP367-201ENST00000516557 118 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 RNU6-314P-201ENST00000516574 104 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXD4P09016 FAM92A1P1-201ENST00000528023 890 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD4P09016 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD4P09016 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD4P09016 AC136619.2-201ENST00000563361 631 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 MIR4293-201ENST00000584305 78 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AC092954.2-201ENST00000609103 430 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AC093838.1-201ENST00000613014 469 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AL138880.2-201ENST00000616214 239 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 CR381653.2-201ENST00000624041 768 ntBASIC2.7□□□□□ -1.98
HOXD4P09016 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXD4P09016 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXD4P09016 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXD4P09016 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXD4P09016 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.7□□□□□ -1.98
HOXD4P09016 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD4P09016 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD4P09016 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXD4P09016 OR4G2P-201ENST00000328113 903 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 RNU6-169P-201ENST00000365336 107 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 RNU6-1103P-201ENST00000384150 107 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 Y_RNA.554-201ENST00000384672 102 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 MIR493-201ENST00000385254 89 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 RNU6-278P-201ENST00000390945 109 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AL139095.1-201ENST00000404326 391 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 RNU2-62P-201ENST00000410868 191 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 HMGN2P35-201ENST00000412164 270 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 UBE2FP1-201ENST00000416536 447 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 TMEM167AP1-201ENST00000423409 219 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AC073464.1-201ENST00000429823 534 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AL139132.1-201ENST00000431587 344 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 FCF1P1-201ENST00000432690 571 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 MTND3P21-201ENST00000433774 331 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AC024082.2-201ENST00000434771 238 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 RPS20P5-201ENST00000434808 360 ntBASIC2.69□□□□□ -1.98
HOXD4P09016 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD4P09016 AC093156.1-201ENST00000440382 670 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms