Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 IGHV3-29-201ENST00000604817 344 ntBASIC3.82□□□□□ -1.8
COL3A1P02461 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.82□□□□□ -1.8
COL3A1P02461 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.82□□□□□ -1.8
COL3A1P02461 AC091925.1-201ENST00000623204 462 ntBASIC3.82□□□□□ -1.8
COL3A1P02461 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.82□□□□□ -1.8
COL3A1P02461 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL3A1P02461 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL3A1P02461 PROS2P-201ENST00000474651 1951 ntBASIC3.82□□□□□ -1.8
COL3A1P02461 MIR148B-201ENST00000362252 99 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 MIR1-2-201ENST00000384961 85 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 RNU6-1106P-201ENST00000390845 107 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.81□□□□□ -1.8
COL3A1P02461 AC137499.1-201ENST00000427602 88 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.81□□□□□ -1.8
COL3A1P02461 RPL29P29-201ENST00000448725 423 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 CACYBPP2-201ENST00000453625 678 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AL356010.1-201ENST00000456364 102 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 RPS27P29-201ENST00000463110 252 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 HMGN2P26-201ENST00000463169 339 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 PABPC1P3-201ENST00000469174 459 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 RPS15AP17-201ENST00000470598 390 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AP001025.2-201ENST00000490908 477 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.81□□□□□ -1.8
COL3A1P02461 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
COL3A1P02461 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.81□□□□□ -1.8
COL3A1P02461 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.81□□□□□ -1.8
COL3A1P02461 RNU6-488P-201ENST00000515918 99 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 RNU6-123P-201ENST00000516163 102 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 SNORA25.17-201ENST00000517184 124 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 RNU6-988P-201ENST00000519081 107 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AC090572.1-201ENST00000519251 160 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 COX6CP5-201ENST00000527162 228 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.81□□□□□ -1.8
COL3A1P02461 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.81□□□□□ -1.8
COL3A1P02461 AC098848.2-201ENST00000588023 330 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 RNU6-84P-201ENST00000607737 102 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 MIR6715A-201ENST00000615929 79 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AC087588.2-201ENST00000617667 426 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL3A1P02461 MTND4LP32-201ENST00000636111 270 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL3A1P02461 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.81□□□□□ -1.8
COL3A1P02461 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.81□□□□□ -1.8
COL3A1P02461 Y_RNA.452-201ENST00000384202 108 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 RNU6-851P-201ENST00000384565 107 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 SNORA48.8-201ENST00000391324 134 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 RNA5SP274-201ENST00000410484 108 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AC078974.1-201ENST00000411597 223 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 HSPE1P1-201ENST00000421494 318 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 USP9YP16-201ENST00000430287 407 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 ERLEC1P1-201ENST00000433806 578 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 RPS15AP9-201ENST00000439856 381 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 RPS24P13-201ENST00000442520 397 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 USP9YP23-201ENST00000455085 407 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 RPS20P32-201ENST00000456044 356 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AC233702.1-201ENST00000482905 502 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.8□□□□□ -1.8
COL3A1P02461 TMEM251P1-201ENST00000503717 318 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 HMGB3P15-201ENST00000507326 574 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.8□□□□□ -1.8
COL3A1P02461 AC022616.3-201ENST00000523940 148 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL3A1P02461 SNRPGP18-201ENST00000553000 214 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.8□□□□□ -1.8
COL3A1P02461 GTF3AP2-201ENST00000557014 266 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 SULT1C2P1-202ENST00000562418 459 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 BBIP1P1-201ENST00000602999 279 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 uc_338.15-201ENST00000615470 191 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 AC091953.2-201ENST00000623979 160 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.8□□□□□ -1.8
COL3A1P02461 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.8□□□□□ -1.8
COL3A1P02461 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL3A1P02461 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.8□□□□□ -1.8
COL3A1P02461 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL3A1P02461 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
COL3A1P02461 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL3A1P02461 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.8□□□□□ -1.8
COL3A1P02461 FTLP6-201ENST00000355274 422 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 MIR449A-201ENST00000362113 91 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 Y_RNA.187-201ENST00000363918 113 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 RNU4-1-201ENST00000363925 141 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 RNU6-1013P-201ENST00000384180 107 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 MT-TR-201ENST00000387439 65 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 SNORD37.1-201ENST00000390968 65 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 CISD1P1-201ENST00000393907 327 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 RNU4-26P-201ENST00000410270 107 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 RNU2-6P-201ENST00000411404 190 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 AC113618.1-201ENST00000416747 285 ntBASIC3.79□□□□□ -1.8
COL3A1P02461 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.79□□□□□ -1.8
COL3A1P02461 Y_RNA.635-201ENST00000459041 101 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms