Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CBX4O00257 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
CBX4O00257 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.09□□□□□ -1.76
CBX4O00257 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CBX4O00257 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CBX4O00257 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.08□□□□□ -1.76
CBX4O00257 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CBX4O00257 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.08□□□□□ -1.76
CBX4O00257 RNU6-593P-201ENST00000364716 112 ntBASIC4.08□□□□□ -1.76
CBX4O00257 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
CBX4O00257 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CBX4O00257 RNU6-601P-201ENST00000384540 107 ntBASIC4.08□□□□□ -1.76
CBX4O00257 RNY4P36-201ENST00000391116 96 ntBASIC4.08□□□□□ -1.76
CBX4O00257 MTCYBP4-201ENST00000401524 249 ntBASIC4.08□□□□□ -1.76
CBX4O00257 MIR1251-201ENST00000408552 70 ntBASIC4.08□□□□□ -1.76
CBX4O00257 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CBX4O00257 RNU2-68P-201ENST00000410878 191 ntBASIC4.08□□□□□ -1.76
CBX4O00257 RNA5SP39-201ENST00000411245 120 ntBASIC4.08□□□□□ -1.76
CBX4O00257 NDUFB4P6-201ENST00000436819 366 ntBASIC4.08□□□□□ -1.76
CBX4O00257 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.08□□□□□ -1.76
CBX4O00257 AL500522.2-201ENST00000448562 343 ntBASIC4.08□□□□□ -1.76
CBX4O00257 CECR9-201ENST00000453421 199 ntBASIC4.08□□□□□ -1.76
CBX4O00257 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.08□□□□□ -1.76
CBX4O00257 AC025445.1-201ENST00000502728 300 ntBASIC4.08□□□□□ -1.76
CBX4O00257 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.08□□□□□ -1.76
CBX4O00257 AC025554.1-201ENST00000505641 188 ntBASIC4.08□□□□□ -1.76
CBX4O00257 Y_RNA.718-201ENST00000517110 102 ntBASIC4.08□□□□□ -1.76
CBX4O00257 IGKV2-38-201ENST00000517443 247 ntBASIC4.08□□□□□ -1.76
CBX4O00257 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.08□□□□□ -1.76
CBX4O00257 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CBX4O00257 AC091516.1-201ENST00000549191 703 ntBASIC4.08□□□□□ -1.76
CBX4O00257 ANP32BP3-201ENST00000559213 706 ntBASIC4.08□□□□□ -1.76
CBX4O00257 ZNF192P1-203ENST00000565888 810 ntBASIC4.08□□□□□ -1.76
CBX4O00257 MIR5685-201ENST00000579080 79 ntBASIC4.08□□□□□ -1.76
CBX4O00257 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.08□□□□□ -1.76
CBX4O00257 AC100830.2-201ENST00000581636 240 ntBASIC4.08□□□□□ -1.76
CBX4O00257 MIR5690-201ENST00000583739 73 ntBASIC4.08□□□□□ -1.76
CBX4O00257 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.08□□□□□ -1.76
CBX4O00257 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.08□□□□□ -1.76
CBX4O00257 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.08□□□□□ -1.76
CBX4O00257 RMST_4.1-201ENST00000616886 107 ntBASIC4.08□□□□□ -1.76
CBX4O00257 AL713922.2-201ENST00000619384 716 ntBASIC4.08□□□□□ -1.76
CBX4O00257 AC090971.5-201ENST00000621102 293 ntBASIC4.08□□□□□ -1.76
CBX4O00257 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CBX4O00257 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.07□□□□□ -1.76
CBX4O00257 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CBX4O00257 RNA5SP399-201ENST00000364003 117 ntBASIC4.07□□□□□ -1.76
CBX4O00257 AC093578.1-201ENST00000415219 368 ntBASIC4.07□□□□□ -1.76
CBX4O00257 RPS15AP6-201ENST00000420703 385 ntBASIC4.07□□□□□ -1.76
CBX4O00257 HMGB1P9-201ENST00000429856 646 ntBASIC4.07□□□□□ -1.76
CBX4O00257 RPS6P12-201ENST00000432491 726 ntBASIC4.07□□□□□ -1.76
CBX4O00257 HMGB1P12-201ENST00000438594 598 ntBASIC4.07□□□□□ -1.76
CBX4O00257 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.07□□□□□ -1.76
CBX4O00257 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.07□□□□□ -1.76
CBX4O00257 AC084198.1-201ENST00000477747 402 ntBASIC4.07□□□□□ -1.76
CBX4O00257 RPS4XP13-201ENST00000483219 789 ntBASIC4.07□□□□□ -1.76
CBX4O00257 RN7SL271P-201ENST00000487601 295 ntBASIC4.07□□□□□ -1.76
CBX4O00257 AC096745.1-201ENST00000509945 370 ntBASIC4.07□□□□□ -1.76
CBX4O00257 RNA5SP165-201ENST00000517142 115 ntBASIC4.07□□□□□ -1.76
CBX4O00257 RNU1-54P-201ENST00000517181 120 ntBASIC4.07□□□□□ -1.76
CBX4O00257 RNA5SP179-201ENST00000517284 121 ntBASIC4.07□□□□□ -1.76
CBX4O00257 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.07□□□□□ -1.76
CBX4O00257 TRMT10BP1-201ENST00000519377 943 ntBASIC4.07□□□□□ -1.76
CBX4O00257 AP005597.4-201ENST00000526762 229 ntBASIC4.07□□□□□ -1.76
CBX4O00257 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.07□□□□□ -1.76
CBX4O00257 AC091167.4-201ENST00000605079 184 ntBASIC4.07□□□□□ -1.76
CBX4O00257 RNU6-85P-201ENST00000605989 107 ntBASIC4.07□□□□□ -1.76
CBX4O00257 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.07□□□□□ -1.76
CBX4O00257 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.07□□□□□ -1.76
CBX4O00257 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CBX4O00257 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.07□□□□□ -1.76
CBX4O00257 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CBX4O00257 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CBX4O00257 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CBX4O00257 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 AL672296.1-201ENST00000427780 2158 ntBASIC4.06□□□□□ -1.76
CBX4O00257 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CBX4O00257 AC138393.1-203ENST00000327086 343 ntBASIC4.06□□□□□ -1.76
CBX4O00257 SNORD74.4-201ENST00000364129 80 ntBASIC4.06□□□□□ -1.76
CBX4O00257 SNORD46.1-201ENST00000364139 104 ntBASIC4.06□□□□□ -1.76
CBX4O00257 Y_RNA.324-201ENST00000365165 102 ntBASIC4.06□□□□□ -1.76
CBX4O00257 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
CBX4O00257 MIR200C-201ENST00000384980 68 ntBASIC4.06□□□□□ -1.76
CBX4O00257 MIR513A2-201ENST00000385249 127 ntBASIC4.06□□□□□ -1.76
CBX4O00257 MIR325-201ENST00000385260 98 ntBASIC4.06□□□□□ -1.76
CBX4O00257 RNU2-3P-201ENST00000410144 191 ntBASIC4.06□□□□□ -1.76
CBX4O00257 RNU6-293P-201ENST00000411259 106 ntBASIC4.06□□□□□ -1.76
CBX4O00257 CYCSP33-201ENST00000414485 327 ntBASIC4.06□□□□□ -1.76
CBX4O00257 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.06□□□□□ -1.76
CBX4O00257 UBE2V1P4-201ENST00000425374 344 ntBASIC4.06□□□□□ -1.76
CBX4O00257 SKA2P1-201ENST00000425592 390 ntBASIC4.06□□□□□ -1.76
CBX4O00257 TOMM20P4-201ENST00000427861 435 ntBASIC4.06□□□□□ -1.76
CBX4O00257 YME1L1P1-201ENST00000429435 297 ntBASIC4.06□□□□□ -1.76
CBX4O00257 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.06□□□□□ -1.76
CBX4O00257 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.06□□□□□ -1.76
CBX4O00257 AL356535.1-201ENST00000440335 398 ntBASIC4.06□□□□□ -1.76
CBX4O00257 AL451050.1-201ENST00000450126 415 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms