Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU6-213P-201ENST00000384051 104 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU6-217P-201ENST00000384164 104 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 MIR200C-201ENST00000384980 68 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 SNORA3C-201ENST00000408792 125 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC006946.1-201ENST00000429106 328 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 SNORA71B-202ENST00000439232 272 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 NDUFB1P2-201ENST00000449477 176 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 ANP32BP2-201ENST00000454525 545 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 HMGN2P7-201ENST00000456186 273 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 RNA5SP310-201ENST00000459084 116 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU6-329P-201ENST00000459618 107 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 RPL21P93-201ENST00000480465 489 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC083904.1-201ENST00000487828 231 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC026801.1-201ENST00000497178 464 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 MTND3P22-201ENST00000510932 243 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 SNORA19.2-201ENST00000516013 114 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU6-507P-201ENST00000516045 100 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 SNORA14.1-201ENST00000516113 141 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC090136.1-201ENST00000520009 240 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC107953.1-201ENST00000522216 297 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC005498.1-201ENST00000592125 465 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 BNIP3P25-201ENST00000596023 559 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC004805.2-201ENST00000605382 482 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC012531.5-201ENST00000611375 151 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC064801.1-201ENST00000612025 407 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 AC002076.2-201ENST00000617362 122 ntBASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHGA3Q9Y5H0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 RNA5SP295-201ENST00000362655 121 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU6-1179P-201ENST00000384667 107 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 MIR449B-201ENST00000384995 97 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 MIR325-201ENST00000385260 98 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 RPS4XP3-201ENST00000398541 413 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU4-6P-201ENST00000410804 122 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AL353621.1-201ENST00000418219 243 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AL691449.1-201ENST00000426570 421 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AC006011.1-201ENST00000442758 349 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 BRK1P2-201ENST00000442875 223 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU4-49P-201ENST00000516080 140 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU7-30P-201ENST00000516835 62 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AC011602.1-201ENST00000546484 331 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AC120057.2-201ENST00000571520 271 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 FTX_3.1-201ENST00000610451 147 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AL354798.1-201ENST00000622505 329 ntBASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
PCDHGA3Q9Y5H0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 Y_RNA.167-201ENST00000363735 109 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 SNORD81.2-201ENST00000365153 76 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 MIR578-201ENST00000384828 96 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 MIR23A-201ENST00000385245 73 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 RPL21P17-201ENST00000397467 475 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 RPS4XP7-201ENST00000406274 780 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU6-607P-201ENST00000411283 108 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AC011742.1-201ENST00000431448 434 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AL445584.1-201ENST00000431451 330 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AL500522.2-201ENST00000448562 343 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 RNU7-170P-201ENST00000459303 61 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 PPIAP15-201ENST00000479662 484 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 RPL32P34-201ENST00000486380 400 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 MTCO1P29-201ENST00000496868 288 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 NDUFB4P9-201ENST00000511646 388 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 MIR5684-201ENST00000585074 65 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AL645944.1-201ENST00000603857 493 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AL391261.4-201ENST00000616012 481 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 CR392039.5-201ENST00000623201 510 ntBASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.88□□□□□ -1.79
PCDHGA3Q9Y5H0 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms