Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC092809.3-201ENST00000415453 231 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC096649.2-201ENST00000416186 393 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC139453.3-201ENST00000493276 369 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 Y_RNA.689-201ENST00000516589 107 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 RNU6-703P-201ENST00000516946 107 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC009812.2-201ENST00000517657 457 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 PSMA2P1-201ENST00000526365 646 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 OR5B19P-201ENST00000531766 928 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC087883.1-201ENST00000551882 391 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC110760.3-201ENST00000598794 467 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AL160281.1-201ENST00000605307 311 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AL161734.1-201ENST00000609720 557 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC090617.7-201ENST00000623952 126 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS28Q9UK41 MIR22-201ENST00000362190 85 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 SNORA71.1-201ENST00000364523 117 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 RNU6-750P-201ENST00000390946 107 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 MIR1302-8-201ENST00000408342 128 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS28Q9UK41 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS28Q9UK41 AC080014.1-201ENST00000496877 1201 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 MRPS36P2-201ENST00000512569 299 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 RNU6-1315P-201ENST00000517187 99 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS28Q9UK41 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS28Q9UK41 AC064872.1-201ENST00000604823 1072 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 AL359547.2-201ENST00000615810 418 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 MIR3199-2-201ENST00000636243 86 ntBASIC3.14□□□□□ -1.91
VPS28Q9UK41 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
VPS28Q9UK41 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS28Q9UK41 Y_RNA.77-201ENST00000362962 107 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 RNU6-169P-201ENST00000365336 107 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AL122016.1-201ENST00000403365 367 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 RN7SKP220-201ENST00000410611 288 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 RN7SKP58-201ENST00000411010 305 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC245054.2-201ENST00000415639 319 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 C1DP2-201ENST00000418167 426 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 BRK1P2-201ENST00000442875 223 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC009296.1-201ENST00000443146 155 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC109927.2-201ENST00000506416 303 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC108078.2-201ENST00000510750 236 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 RN7SKP43-201ENST00000516173 320 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 SCARNA24.1-201ENST00000516465 137 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 RNU6-1220P-201ENST00000517126 108 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC022080.3-201ENST00000544433 482 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 MIR4506-201ENST00000584693 77 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC011471.1-201ENST00000585766 187 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC245014.2-201ENST00000603689 287 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 AC246785.4-201ENST00000605374 287 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 MIR15A-201ENST00000607334 83 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 ATP5A1P2-202ENST00000616464 443 ntBASIC3.13□□□□□ -1.91
VPS28Q9UK41 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS28Q9UK41 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS28Q9UK41 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS28Q9UK41 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS28Q9UK41 OR5J1P-201ENST00000313544 939 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS28Q9UK41 Y_RNA.22-201ENST00000362492 102 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 RNU1-140P-201ENST00000365040 165 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 DYNLT3P1-201ENST00000378574 347 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 SNORA54-201ENST00000384281 123 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC096664.2-201ENST00000411843 406 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 MTND3P17-201ENST00000416968 344 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AL513477.1-202ENST00000417061 214 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC022018.1-201ENST00000430685 241 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AL353706.1-201ENST00000436728 494 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 RPS12P18-201ENST00000442381 270 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC244505.5-201ENST00000443639 207 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 Z96811.1-201ENST00000445880 108 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS28Q9UK41 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS28Q9UK41 RPL31P3-201ENST00000458430 332 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 RNU6-956P-201ENST00000458868 103 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms