Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 SNORA4.3-201ENST00000365564 137 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 MIR183-201ENST00000384958 110 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 MIR218-2-201ENST00000385006 110 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 MIR34B-201ENST00000385076 84 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 MIR1183-201ENST00000408856 89 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 RNA5SP104-201ENST00000410989 118 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 RAC1P3-201ENST00000416129 580 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AL353748.1-201ENST00000440753 474 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC008264.1-201ENST00000447612 367 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 SNORD105B-201ENST00000458770 79 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 RPL37P6-201ENST00000460682 294 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC084198.1-201ENST00000477747 402 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 RN7SL293P-201ENST00000481765 281 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 TBCAP3-201ENST00000512475 312 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AL355375.2-201ENST00000574825 175 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 MIR3690-201ENST00000580266 75 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC025946.2-201ENST00000603398 234 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AL137849.1-201ENST00000604767 169 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AC022418.1-201ENST00000624118 445 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 AL512643.1-201ENST00000635735 524 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 UBE3AP2-201ENST00000429033 2259 ntBASIC3.87□□□□□ -1.79
TDP1Q9NUW8 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.87□□□□□ -1.79
TDP1Q9NUW8 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RNU4-79P-201ENST00000362764 141 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RNU6-371P-201ENST00000364283 108 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RNU4-76P-201ENST00000364509 141 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RNU6-1013P-201ENST00000384180 107 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 Y_RNA.474-201ENST00000384341 102 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RNU6-45P-201ENST00000384471 107 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RPS4XP7-201ENST00000406274 780 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RNA5SP306-201ENST00000411087 107 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RPLP0P7-201ENST00000416050 667 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 MTND1P14-201ENST00000427400 950 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 RPL7P43-201ENST00000478876 753 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC025445.1-201ENST00000502728 300 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 SNORA19.2-201ENST00000516013 114 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AP000889.2-201ENST00000532684 490 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC090877.1-201ENST00000561418 344 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC012468.1-201ENST00000604888 430 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC007179.3-201ENST00000604976 235 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC135507.2-201ENST00000612443 309 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 U6.105-201ENST00000637379 88 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC119674.1-207ENST00000641355 633 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 IPO8P1-201ENST00000455509 3109 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TDP1Q9NUW8 AC008568.2-201ENST00000623862 2313 ntBASIC3.86□□□□□ -1.79
TDP1Q9NUW8 MTCO1P12-201ENST00000414273 1543 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RNU6-254P-201ENST00000363377 107 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RNA5SP72-201ENST00000364442 117 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RNA5SP424-201ENST00000390988 115 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RNA5SP39-201ENST00000411245 120 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RNU2-71P-201ENST00000411395 189 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC063979.1-201ENST00000415539 377 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC007919.1-201ENST00000429380 217 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RPS15AP34-201ENST00000487776 387 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms