Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.12□□□□□ -1.59
ATG3Q9NT62 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.12□□□□□ -1.59
ATG3Q9NT62 MIR5692C1-201ENST00000585309 91 ntBASIC5.12□□□□□ -1.59
ATG3Q9NT62 HMGB1P50-201ENST00000605814 607 ntBASIC5.12□□□□□ -1.59
ATG3Q9NT62 AL391261.4-201ENST00000616012 481 ntBASIC5.12□□□□□ -1.59
ATG3Q9NT62 AL136313.1-201ENST00000624804 202 ntBASIC5.12□□□□□ -1.59
ATG3Q9NT62 AL606534.2-204ENST00000635008 178 ntBASIC5.12□□□□□ -1.59
ATG3Q9NT62 MIR4496-201ENST00000635896 61 ntBASIC5.12□□□□□ -1.59
ATG3Q9NT62 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
ATG3Q9NT62 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
ATG3Q9NT62 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
ATG3Q9NT62 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
ATG3Q9NT62 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.12□□□□□ -1.59
ATG3Q9NT62 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 RNU6-1287P-201ENST00000362914 107 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 SNORA70E-201ENST00000384492 135 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 RNU6-1060P-201ENST00000384664 107 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL445529.1-201ENST00000398713 389 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL024474.1-201ENST00000404655 591 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 BX682237.1-201ENST00000415016 335 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 RPL23AP50-201ENST00000434149 455 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 UBE2V1P13-201ENST00000436983 439 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AC011816.1-201ENST00000441346 546 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 FTH1P25-201ENST00000447665 469 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL451050.1-201ENST00000450126 415 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 snoU13.8-201ENST00000458890 104 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 FO393415.2-201ENST00000480085 343 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AC104806.1-201ENST00000508720 308 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 RNU2-10P-201ENST00000516375 211 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 IGHV3-76-201ENST00000522465 295 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AC022616.4-201ENST00000522985 181 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL451044.1-201ENST00000604867 238 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AC084757.4-201ENST00000616350 526 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL596245.1-201ENST00000618994 362 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AC055839.1-201ENST00000634467 498 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
ATG3Q9NT62 MTCO1P24-201ENST00000515438 1558 ntBASIC5.11□□□□□ -1.59
ATG3Q9NT62 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
ATG3Q9NT62 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
ATG3Q9NT62 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
ATG3Q9NT62 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC092435.4-201ENST00000623012 4159 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
ATG3Q9NT62 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 RNA5SP52-201ENST00000362448 134 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 SNORA20.1-201ENST00000364790 130 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 Y_RNA.376-201ENST00000365638 108 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 Y_RNA.515-201ENST00000384535 112 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 Y_RNA.562-201ENST00000384695 113 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 RNU6-713P-201ENST00000384761 107 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 MIR153-1-201ENST00000384914 90 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 MIR93-201ENST00000385024 80 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 RNU6-550P-201ENST00000391057 101 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 MIR1252-201ENST00000408861 65 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 RNA5SP39-201ENST00000411245 120 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 RPL31P2-201ENST00000413849 377 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AL590135.1-201ENST00000422215 156 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AL139247.1-201ENST00000422768 325 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 HMGN2P31-201ENST00000432430 273 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 MTND4LP30-201ENST00000454092 297 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC108059.3-201ENST00000456388 214 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 DYNLL1P5-201ENST00000467158 270 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 UBE2CP3-201ENST00000502715 450 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 Y_RNA.673-201ENST00000516306 88 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC022080.3-201ENST00000544433 482 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 MIR3200-201ENST00000580767 85 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 MIR3910-1-201ENST00000580936 111 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 BDP1P-201ENST00000582658 1990 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC007566.2-201ENST00000603642 413 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC096772.1-201ENST00000609146 564 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC096577.2-201ENST00000611455 153 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
ATG3Q9NT62 AC005344.1-201ENST00000613391 459 ntBASIC5.1□□□□□ -1.59
ATG3Q9NT62 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
ATG3Q9NT62 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
ATG3Q9NT62 TPTE2P4-201ENST00000258589 1605 ntBASIC5.09□□□□□ -1.59
ATG3Q9NT62 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
ATG3Q9NT62 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
ATG3Q9NT62 RNU6-200P-201ENST00000364743 107 ntBASIC5.09□□□□□ -1.59
ATG3Q9NT62 RNU6-806P-201ENST00000365147 105 ntBASIC5.09□□□□□ -1.59
ATG3Q9NT62 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms