Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 Y_RNA.579-201ENST00000390939 94 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 CYCSP33-201ENST00000414485 327 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC108032.1-201ENST00000416706 207 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AL158071.1-201ENST00000430315 461 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AL627311.1-201ENST00000431514 115 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AL645568.3-201ENST00000433683 316 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC092573.2-201ENST00000434546 243 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 ANP32BP2-201ENST00000454525 545 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AF213884.1-201ENST00000488102 463 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 HMGB3P15-201ENST00000507326 574 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC116337.1-201ENST00000509680 687 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 RNU1-61P-201ENST00000516107 151 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC025755.1-201ENST00000521306 278 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 APOOP3-201ENST00000536787 586 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC063950.1-201ENST00000552036 308 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 AC136601.2-201ENST00000604356 474 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 NCAPGP1-201ENST00000505112 1814 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC138393.1-203ENST00000327086 343 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 Y_RNA.146-201ENST00000363549 102 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 RNU6-43P-201ENST00000384302 107 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 RNU6-140P-201ENST00000384566 108 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AL022722.2-201ENST00000402519 180 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 Y_RNA.623-201ENST00000411128 95 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC245054.2-201ENST00000415639 319 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC092047.1-201ENST00000424997 240 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 RPL7P37-201ENST00000425095 738 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC007560.1-201ENST00000426912 237 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC103987.1-201ENST00000473394 348 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC084357.1-201ENST00000473404 255 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 FTH1P9-201ENST00000513251 355 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 ANP32BP3-201ENST00000559213 706 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AC022655.2-201ENST00000577280 318 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AL355598.1-201ENST00000604169 202 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AL157817.1-201ENST00000614264 790 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 MIR7702-201ENST00000621931 59 ntBASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.12□□□□□ -1.75
TRIM39Q9HCM9 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 SNORD62.1-201ENST00000362541 86 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 RNU6-1329P-201ENST00000365664 107 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 RNU6-95P-201ENST00000384697 107 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 HSPE1P26-201ENST00000405341 275 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 U3.42-201ENST00000408746 214 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 RNU2-37P-201ENST00000410695 177 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 AF228730.4-201ENST00000421457 183 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 UBE2D3P2-201ENST00000424409 445 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 AL353729.1-201ENST00000425044 720 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 MYL8P-204ENST00000431574 518 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 BRK1P2-201ENST00000442875 223 ntBASIC4.11□□□□□ -1.75
TRIM39Q9HCM9 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms