Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 NDUFA5P4-201ENST00000436704 385 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 IPO7P1-201ENST00000442031 636 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC009474.2-201ENST00000451383 136 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 MTATP6P7-201ENST00000453315 681 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 PPP1R2P5-201ENST00000457256 603 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC079203.1-201ENST00000487972 404 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC008427.1-201ENST00000503102 655 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC093677.1-201ENST00000514414 678 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC022447.1-201ENST00000515358 464 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 RNU6-362P-201ENST00000516736 90 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC118942.1-201ENST00000529674 1035 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 CYB5AP5-201ENST00000549779 389 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 ARL2BPP2-201ENST00000550907 489 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC002545.1-201ENST00000592511 181 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AP000403.1-201ENST00000603349 851 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AL583856.2-201ENST00000606298 543 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 MIR1322-201ENST00000638013 71 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
USP42Q9H9J4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
USP42Q9H9J4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
USP42Q9H9J4 Y_RNA.122-201ENST00000363331 96 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 RNU5E-8P-201ENST00000363502 116 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 DHFRP6-201ENST00000401776 268 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 AL109755.1-201ENST00000401791 649 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 POLHP1-201ENST00000411806 470 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.04□□□□□ -2.08
USP42Q9H9J4 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.04□□□□□ -2.08
USP42Q9H9J4 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
USP42Q9H9J4 OSTCP8-201ENST00000445117 448 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 AL500527.1-201ENST00000448532 255 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.04□□□□□ -2.08
USP42Q9H9J4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.04□□□□□ -2.08
USP42Q9H9J4 AP005902.1-201ENST00000521358 186 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
USP42Q9H9J4 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.04□□□□□ -2.08
USP42Q9H9J4 AC125611.1-201ENST00000549563 229 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC2.04□□□□□ -2.08
USP42Q9H9J4 AC009127.3-201ENST00000570531 403 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 AC005951.2-201ENST00000576282 495 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 MIR5571-201ENST00000577998 113 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 AL450336.1-201ENST00000605180 586 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
USP42Q9H9J4 AC103710.2-202ENST00000641454 2853 ntBASIC2.04□□□□□ -2.08
USP42Q9H9J4 AL356473.1-201ENST00000406203 1408 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 AL596028.1-201ENST00000326971 197 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 Y_RNA.224-201ENST00000364308 111 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 RNU6-707P-201ENST00000364647 95 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 RPL23AP29-201ENST00000397284 453 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.03□□□□□ -2.08
USP42Q9H9J4 MED14P1-201ENST00000430517 648 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 RPL17P35-201ENST00000432217 549 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.03□□□□□ -2.08
USP42Q9H9J4 AL451074.3-201ENST00000437709 472 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 AL158053.1-201ENST00000441503 453 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 USP9YP10-201ENST00000454868 628 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.03□□□□□ -2.08
USP42Q9H9J4 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.03□□□□□ -2.08
USP42Q9H9J4 AC108734.3-201ENST00000481241 1165 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.03□□□□□ -2.08
USP42Q9H9J4 AC010186.2-204ENST00000537668 439 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 HSPE1P3-201ENST00000559254 309 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.03□□□□□ -2.08
USP42Q9H9J4 AL445435.1-201ENST00000604232 665 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 AL390208.1-201ENST00000605885 644 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.03□□□□□ -2.08
USP42Q9H9J4 AP005229.2-201ENST00000609980 697 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 FTX_3.1-201ENST00000610451 147 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 AL596245.1-201ENST00000618994 362 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.03□□□□□ -2.08
USP42Q9H9J4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
USP42Q9H9J4 RNU5B-1-201ENST00000363286 116 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 RNU1-39P-201ENST00000383897 165 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 MIR506-201ENST00000384998 124 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 RNU6-750P-201ENST00000390946 107 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 MIR1323-201ENST00000408090 73 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 SNORD23.1-201ENST00000408212 104 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 RNU6-174P-201ENST00000410406 106 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 AL109913.1-201ENST00000421173 514 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 FAM204CP-201ENST00000424489 642 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 FO393414.1-201ENST00000428697 1184 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 HMGB1P9-201ENST00000429856 646 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 AL353718.1-201ENST00000451028 517 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 snoU13.8-201ENST00000458890 104 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 RPS15AP36-201ENST00000492022 382 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 AC098591.2-201ENST00000510152 315 ntBASIC2.02□□□□□ -2.09
USP42Q9H9J4 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.02□□□□□ -2.09
USP42Q9H9J4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.02□□□□□ -2.09
USP42Q9H9J4 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.02□□□□□ -2.09
USP42Q9H9J4 WISP1-OT1-201ENST00000602893 642 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms