Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL137003.2-201ENST00000606924 2538 ntBASIC2.68□□□□□ -1.98
CCDC28BQ9BUN5 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC28BQ9BUN5 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC28BQ9BUN5 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 MTND5P26-201ENST00000426018 1752 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 CR848007.1-201ENST00000442354 1699 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 RNU6-169P-201ENST00000365336 107 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 Y_RNA.505-201ENST00000384489 102 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 NDUFB4P7-201ENST00000423198 363 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 RPL7L1P10-201ENST00000427790 463 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 RPL31P35-201ENST00000431058 377 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC079448.1-201ENST00000449377 373 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 RPS20P20-201ENST00000460498 340 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 RPS3AP17-201ENST00000472594 777 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC004924.1-201ENST00000480160 781 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC010493.1-201ENST00000513479 292 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC114797.1-201ENST00000514003 728 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 SCGB1D5P-201ENST00000515134 247 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 SCARNA15.2-201ENST00000516409 127 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 NUTF2P8-201ENST00000604593 363 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AL022154.1-201ENST00000604698 785 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 MIR98-201ENST00000606724 119 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 MIR6798-201ENST00000612887 67 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC244100.1-202ENST00000621554 382 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AC090740.1-201ENST00000623193 2262 ntBASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
CCDC28BQ9BUN5 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 SNORD56.2-201ENST00000363242 71 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 RNU6-1097P-201ENST00000363586 107 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 RNU6-1103P-201ENST00000384150 107 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 SNORA80E-201ENST00000384744 137 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 MIR514A1-201ENST00000385133 98 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL356057.2-201ENST00000403318 432 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 GSTA9P-201ENST00000406231 611 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL645937.1-202ENST00000421799 937 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 C1DP4-201ENST00000455429 424 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC006445.1-201ENST00000491925 405 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC083906.5-201ENST00000503722 328 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 HMGB1P29-201ENST00000505659 499 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC108078.1-201ENST00000508073 725 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 RNU7-51P-201ENST00000516560 62 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC009812.2-201ENST00000517657 457 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC022880.1-201ENST00000534017 973 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 RPS3AP4-201ENST00000555161 764 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC245505.1-201ENST00000556398 224 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL670379.6-201ENST00000603753 252 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL670379.11-201ENST00000604059 253 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC008162.1-201ENST00000604718 254 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL670379.1-201ENST00000604752 252 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL670379.5-201ENST00000605253 252 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL670379.12-201ENST00000605291 253 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL670379.8-201ENST00000605353 252 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AL670379.7-201ENST00000605823 252 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 AC008568.2-201ENST00000623862 2313 ntBASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC28BQ9BUN5 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.98
CCDC28BQ9BUN5 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC28BQ9BUN5 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms