Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC006445.2-201ENST00000510061 472 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC009646.1-201ENST00000510455 318 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 SNORD27.1-201ENST00000516319 72 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 RNU6-314P-201ENST00000516574 104 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 OR5AL2P-201ENST00000532185 920 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 MTCO3P24-201ENST00000572729 782 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC025034.2-201ENST00000623264 286 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 MTND5P42-201ENST00000637720 498 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
NKX3-1Q99801 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
NKX3-1Q99801 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC073346.2-201ENST00000624724 2058 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
NKX3-1Q99801 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
NKX3-1Q99801 CUL1P1-201ENST00000509510 2425 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
NKX3-1Q99801 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
NKX3-1Q99801 RNU6-1120P-201ENST00000362988 108 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 SNORA38.1-201ENST00000364172 131 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 RNA5SP267-201ENST00000364893 126 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 RPL21P3-201ENST00000395517 478 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 RPS4XP3-201ENST00000398541 413 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 RPS4XP8-201ENST00000402039 771 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
NKX3-1Q99801 FAT1P1-201ENST00000406588 507 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 MIR548F1-201ENST00000408667 84 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 TMEM167AP1-201ENST00000423409 219 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC092047.1-201ENST00000424997 240 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 RPL21P40-201ENST00000428586 483 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AL590383.1-201ENST00000428602 75 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AL592045.1-201ENST00000429867 352 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AL353705.1-201ENST00000433468 480 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 MTND1P4-201ENST00000435196 415 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 MTND1P34-201ENST00000438556 671 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
NKX3-1Q99801 PSPHP1-201ENST00000450062 261 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 CECR9-201ENST00000453421 199 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AL162395.1-201ENST00000457882 422 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 RPS29P15-201ENST00000458329 171 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC146507.2-201ENST00000460608 476 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC008155.2-201ENST00000464337 397 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 SRRM1P2-201ENST00000464531 1192 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC079382.1-201ENST00000493346 557 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 RNU6-123P-201ENST00000516163 102 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 Y_RNA.704-201ENST00000516851 102 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 OR4R1P-201ENST00000529879 463 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AK6P1-201ENST00000540219 478 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 TPRKBP2-201ENST00000565969 475 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 MIR4775-201ENST00000581168 75 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 MIR4506-201ENST00000584693 77 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC008752.3-201ENST00000588113 712 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC136601.2-201ENST00000604356 474 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AL158032.1-201ENST00000605401 106 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC022893.3-201ENST00000607665 437 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC017083.3-201ENST00000609955 700 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 uc_338.25-201ENST00000613756 156 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AL359880.1-201ENST00000621879 266 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC139792.3-201ENST00000623525 224 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 SEPT14P19-203ENST00000633205 211 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC068137.3-201ENST00000639191 341 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC073869.6-201ENST00000640656 341 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 AC027514.1-201ENST00000588561 1603 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
NKX3-1Q99801 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.74□□□□□ -1.97
NKX3-1Q99801 AL049641.1-201ENST00000441055 1948 ntBASIC2.74□□□□□ -1.97
NKX3-1Q99801 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
NKX3-1Q99801 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.73□□□□□ -1.97
NKX3-1Q99801 RNU6-179P-201ENST00000363350 107 ntBASIC2.73□□□□□ -1.97
NKX3-1Q99801 RNU6-525P-201ENST00000363685 104 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 155.2 ms