Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AP000860.1-201ENST00000605250 559 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC121334.2-201ENST00000605387 271 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.97□□□□□ -1.93
USP28Q96RU2 AC007038.2-201ENST00000608095 740 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.97□□□□□ -1.93
USP28Q96RU2 AL450472.3-201ENST00000615578 367 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.97□□□□□ -1.93
USP28Q96RU2 AL136313.1-201ENST00000624804 202 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 OR5AK4P-201ENST00000635912 903 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 MTCO1P9-201ENST00000505577 1534 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 FARSBP1-201ENST00000435808 1778 ntBASIC2.97□□□□□ -1.93
USP28Q96RU2 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.97□□□□□ -1.93
USP28Q96RU2 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
USP28Q96RU2 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.96□□□□□ -1.94
USP28Q96RU2 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP28Q96RU2 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP28Q96RU2 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
USP28Q96RU2 RNU6-282P-201ENST00000365357 103 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 MIR9-1-201ENST00000385198 89 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP28Q96RU2 RNU2-43P-201ENST00000410306 190 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.96□□□□□ -1.94
USP28Q96RU2 USP9YP28-201ENST00000435142 589 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 MTND1P4-201ENST00000435196 415 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.96□□□□□ -1.94
USP28Q96RU2 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AP000705.1-201ENST00000454567 350 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.96□□□□□ -1.94
USP28Q96RU2 SRRM1P2-201ENST00000464531 1192 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
USP28Q96RU2 AC135721.1-201ENST00000497954 479 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 RPS27P27-201ENST00000498779 255 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 AC105252.1-201ENST00000503089 286 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 AC009901.1-201ENST00000506703 541 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 AC091133.4-201ENST00000511142 308 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 RNA5SP367-201ENST00000516557 118 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 SNORA31.21-201ENST00000517180 77 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 MTCO2P4-201ENST00000517968 247 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.96□□□□□ -1.94
USP28Q96RU2 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AL451007.1-201ENST00000595491 289 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AC245517.5-201ENST00000611529 162 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 AC138649.3-201ENST00000622154 254 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 AC002064.3-201ENST00000623448 346 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AL137790.1-201ENST00000634283 177 ntBASIC2.96□□□□□ -1.94
USP28Q96RU2 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.96□□□□□ -1.94
USP28Q96RU2 AC027514.1-201ENST00000588561 1603 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
USP28Q96RU2 RNU5E-8P-201ENST00000363502 116 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 RNU5A-8P-201ENST00000364102 114 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 RNY3P13-201ENST00000365542 102 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 RNU6-1042P-201ENST00000384204 107 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 RNU6-517P-201ENST00000384362 110 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 SNORA48.2-201ENST00000390926 124 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
USP28Q96RU2 RPL23AP32-201ENST00000395315 459 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.95□□□□□ -1.94
USP28Q96RU2 RPLP0P7-201ENST00000416050 667 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 HMGN2P30-201ENST00000423237 256 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
USP28Q96RU2 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.95□□□□□ -1.94
USP28Q96RU2 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AL451074.3-201ENST00000437709 472 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.95□□□□□ -1.94
USP28Q96RU2 Z96811.1-201ENST00000445880 108 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.95□□□□□ -1.94
USP28Q96RU2 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.95□□□□□ -1.94
USP28Q96RU2 SNRPGP6-201ENST00000451124 220 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC126182.1-201ENST00000478134 357 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 SRIP1-201ENST00000489235 288 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.95□□□□□ -1.94
USP28Q96RU2 RAC1P5-201ENST00000512182 576 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC114797.1-201ENST00000514003 728 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.95□□□□□ -1.94
USP28Q96RU2 RNA5SP337-201ENST00000517007 109 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.95□□□□□ -1.94
USP28Q96RU2 MIR3167-201ENST00000579623 85 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC020895.1-201ENST00000595362 272 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AL356575.1-201ENST00000603008 283 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AL136363.1-201ENST00000605349 337 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AF250324.2-201ENST00000608299 610 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC103710.1-201ENST00000610003 901 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC109347.2-201ENST00000610220 349 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AL359198.2-201ENST00000611836 194 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC006338.1-201ENST00000618453 749 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC136475.10-201ENST00000620253 385 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC099654.12-201ENST00000639868 649 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 AC138915.1-201ENST00000565427 1685 ntBASIC2.95□□□□□ -1.94
USP28Q96RU2 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
USP28Q96RU2 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.94□□□□□ -1.94
USP28Q96RU2 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
USP28Q96RU2 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms