Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC022616.6-201ENST00000520479 119 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC025281.1-201ENST00000567026 265 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC002400.1-201ENST00000569310 726 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 RPL23AP84-201ENST00000571193 464 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL645944.1-201ENST00000603857 493 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC004805.2-201ENST00000605382 482 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 MIR203B-201ENST00000636080 86 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC099654.13-201ENST00000639774 207 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
CCDC54Q8NEL0 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RNU6-188P-201ENST00000364207 107 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RNU6-512P-201ENST00000364438 103 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RNY3P13-201ENST00000365542 102 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 SMIM11P1-201ENST00000369586 178 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RNU6-701P-201ENST00000384059 107 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 NDUFS5P1-201ENST00000405668 289 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RNU4-72P-201ENST00000410754 173 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AF274854.1-201ENST00000413236 615 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 MTCO3P30-201ENST00000426425 670 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 ISCA1P1-201ENST00000426679 387 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC063976.3-201ENST00000426849 329 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RPL7P34-201ENST00000433316 712 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC098826.1-201ENST00000433943 471 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 PGBD4P3-201ENST00000440731 581 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AL831737.1-201ENST00000441288 271 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AP000936.2-201ENST00000447151 681 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 ART2BP-201ENST00000453501 499 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC004263.1-201ENST00000479327 332 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC139453.3-201ENST00000493276 369 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RPS27AP10-201ENST00000496103 208 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC108043.1-201ENST00000512696 574 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 SNORA3.4-201ENST00000515969 96 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC109329.2-201ENST00000519658 482 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 CKS1BP7-201ENST00000522230 235 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC093012.1-202ENST00000549403 582 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC109446.2-201ENST00000567872 497 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 ROCK1P1-201ENST00000573767 549 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC090616.2-202ENST00000584248 222 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC011471.1-201ENST00000585766 187 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC005498.1-201ENST00000592125 465 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 RPS15AP11-201ENST00000594193 385 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AL356280.1-201ENST00000603614 379 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AL022161.1-201ENST00000604390 213 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC007363.1-201ENST00000604736 620 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC026790.2-201ENST00000606282 430 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC245884.12-201ENST00000615364 59 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 MIR7844-201ENST00000616161 122 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC079248.2-201ENST00000623779 326 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 AC006927.3-201ENST00000638789 384 ntBASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC54Q8NEL0 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 ELF2P3-201ENST00000445099 1506 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 RNU6-1284P-201ENST00000363701 100 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 RNU6-553P-201ENST00000364047 96 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 SNORD115.1-201ENST00000391109 76 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL139039.1-201ENST00000401900 692 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 RNU6-1328P-201ENST00000410938 106 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL592148.1-201ENST00000413568 445 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 ZNF90P2-204ENST00000419323 1075 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL451062.2-201ENST00000427515 271 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 SNRPEP9-201ENST00000436794 238 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 IFNA11P-201ENST00000446352 526 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 COX6CP12-201ENST00000446748 202 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 KATNBL1P6-201ENST00000453433 915 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 SNORD109B-201ENST00000458961 67 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 SNORD109A-201ENST00000459128 67 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 RPL23AP45-201ENST00000476406 468 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AL160314.1-201ENST00000490836 438 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC080014.1-201ENST00000496877 1201 ntBASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC54Q8NEL0 NDUFB4P2-201ENST00000509515 391 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 146.3 ms