Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORA6-201ENST00000384033 151 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 RNU6-757P-201ENST00000410334 100 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 RPS3AP44-201ENST00000425466 790 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 PTGES3P4-201ENST00000426243 356 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC093156.1-201ENST00000440382 670 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC005094.1-201ENST00000440420 368 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 RPS24P13-201ENST00000442520 397 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AL606662.1-201ENST00000445763 553 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 ART2BP-201ENST00000453501 499 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC027673.1-201ENST00000456245 405 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 RPL23AP41-201ENST00000484754 458 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC117522.3-201ENST00000507974 584 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC093281.2-201ENST00000510153 597 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 RNU6-703P-201ENST00000516946 107 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 NIFKP6-201ENST00000598115 845 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC021171.1-201ENST00000603137 706 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 SNORD14A-201ENST00000606526 91 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 TUSC7.1-201ENST00000610969 165 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 U4atac.1-201ENST00000618345 95 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AP002782.1-201ENST00000623107 614 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 AP003400.5-201ENST00000624827 617 ntBASIC2.51□□□□□ -2.01
ZNF540Q8NDQ6 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 RNU6-658P-201ENST00000384606 106 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 ZNF90P2-204ENST00000419323 1075 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC003685.2-201ENST00000422795 395 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 UBE2D3P1-201ENST00000436669 444 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 RSU1P2-202ENST00000437884 485 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AL008629.1-201ENST00000438615 184 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC016691.1-201ENST00000441321 413 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 MTATP6P26-201ENST00000445926 662 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC108059.3-201ENST00000456388 214 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 RPL7P18-201ENST00000478965 734 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 SRIP1-201ENST00000489235 288 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC068587.4-201ENST00000533893 186 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC121758.2-201ENST00000553271 193 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC008088.1-201ENST00000580993 280 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 VN1R90P-201ENST00000595717 726 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC006023.1-201ENST00000603944 259 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC091152.3-201ENST00000604227 325 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC007619.2-201ENST00000605743 379 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 PISRT1-201ENST00000626175 531 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 AC104454.1-201ENST00000421341 1401 ntBASIC2.5□□□□□ -2.01
ZNF540Q8NDQ6 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AL109809.4-201ENST00000603520 2185 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 UBE2L2-201ENST00000254302 429 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AL391994.1-201ENST00000254724 282 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 OR5J1P-201ENST00000313544 939 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 UBE2V1P2-201ENST00000397758 440 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 MIR1302-8-201ENST00000408342 128 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC011233.1-201ENST00000422812 283 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 RPL30P4-201ENST00000429309 333 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AL445567.1-201ENST00000439121 144 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 IPO7P1-201ENST00000442031 636 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC124916.1-201ENST00000444020 547 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 FAM103A2P-201ENST00000444122 354 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC010486.2-201ENST00000505572 483 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC010486.1-201ENST00000511793 424 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 MRPS33P3-201ENST00000513456 322 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC118465.1-201ENST00000513820 1271 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 HMGB1P41-201ENST00000520234 440 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC025165.5-201ENST00000602802 578 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 MTCYBP22-201ENST00000603788 447 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms