Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AMD1P1-201ENST00000457220 922 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 HMGN1P18-201ENST00000457642 277 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC108860.1-201ENST00000484521 383 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC026801.2-201ENST00000515352 425 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 HMGB1P41-201ENST00000520234 440 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC004024.1-201ENST00000549244 247 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 ARL2BPP2-201ENST00000550907 489 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 MIR5047-201ENST00000579212 100 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 MIR3944-201ENST00000581277 108 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 MIR4276-201ENST00000584832 70 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC011712.1-201ENST00000588959 234 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 FRG1KP-201ENST00000623592 341 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 MTND4P29-201ENST00000503122 1372 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AL136164.4-201ENST00000625013 2135 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC073343.1-201ENST00000328239 651 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 DEFB108F-201ENST00000344638 222 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 RNU5E-6P-201ENST00000365574 115 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 RNU6-767P-201ENST00000384132 107 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 SDCBPP3-201ENST00000419629 891 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 SRIP2-201ENST00000428470 166 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC005326.1-201ENST00000429197 123 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 SETP5-201ENST00000437270 562 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 HMGB3P11-201ENST00000440127 604 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 CBWD4P-201ENST00000445695 655 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 Z75741.1-201ENST00000446793 314 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 SNORD97-201ENST00000459187 142 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 RN7SL442P-201ENST00000473804 320 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 RPS27AP1-201ENST00000475545 471 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC116562.3-201ENST00000506136 177 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC074250.1-201ENST00000511117 192 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC104027.1-201ENST00000521887 300 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 FAM60DP-201ENST00000524174 632 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC068587.5-201ENST00000528506 175 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC011611.1-201ENST00000552179 197 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AL138976.2-201ENST00000563989 694 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC010338.1-201ENST00000621823 717 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AC073476.4-201ENST00000628409 72 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 MIR4275-201ENST00000636486 87 ntBASIC3.97□□□□□ -1.77
VPS53Q5VIR6 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS53Q5VIR6 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.96□□□□□ -1.77
VPS53Q5VIR6 DDX10P1-201ENST00000448545 1933 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 RNU6-1284P-201ENST00000363701 100 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 RNA5SP267-201ENST00000364893 126 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 MTATP6P4-201ENST00000427725 675 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC093019.1-201ENST00000443135 252 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC092001.1-201ENST00000453012 261 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 RNU7-182P-201ENST00000459009 62 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC006512.1-201ENST00000468816 291 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 MIR3921-201ENST00000577308 85 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 MIR4775-201ENST00000581168 75 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC106900.2-201ENST00000604994 317 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AP001486.3-201ENST00000615334 372 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 SNORD39.4-201ENST00000620099 78 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AL359697.1-201ENST00000624879 587 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 AC090740.1-201ENST00000623193 2262 ntBASIC3.96□□□□□ -1.78
VPS53Q5VIR6 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS53Q5VIR6 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms