Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC005730.3-201ENST00000583067 366 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AC005498.1-201ENST00000592125 465 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AC021749.1-201ENST00000604322 607 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AL161729.4-201ENST00000604650 476 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AC095038.3-201ENST00000634439 195 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-1066P-201ENST00000363573 105 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RNU4-41P-201ENST00000364426 143 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RNU2-43P-201ENST00000410306 190 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC007098.1-201ENST00000420122 367 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC099548.1-201ENST00000421443 426 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 CR848007.2-201ENST00000424918 787 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC079780.1-201ENST00000428259 207 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 HMGB1P9-201ENST00000429856 646 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC013828.1-201ENST00000481845 158 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RPS15AP34-201ENST00000487776 387 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC124947.2-202ENST00000552735 133 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AL391261.3-201ENST00000557194 520 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC107214.2-201ENST00000608204 634 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AP001486.3-201ENST00000615334 372 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC009090.3-201ENST00000616553 565 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AL162373.1-201ENST00000620433 407 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-883P-201ENST00000384597 107 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC016769.3-201ENST00000396562 315 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AL356131.1-201ENST00000405826 414 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 XKRYP1-201ENST00000423438 492 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AL590233.1-201ENST00000430017 456 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 XKRYP2-201ENST00000432915 492 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AL714022.1-201ENST00000439897 151 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC116337.2-201ENST00000477662 156 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-405P-201ENST00000516637 110 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-467P-201ENST00000517027 110 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC090821.2-201ENST00000523552 176 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC093519.1-201ENST00000566109 298 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC068135.2-201ENST00000569293 1028 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC007229.1-201ENST00000590455 412 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AP000238.1-201ENST00000608759 426 ntBASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-1035P-201ENST00000384477 107 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 AL513475.1-201ENST00000406602 315 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 CCNG1P1-201ENST00000406783 885 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 RAC1P7-201ENST00000445367 377 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 RPS15AP27-201ENST00000449183 343 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 RNA5SP135-201ENST00000517019 125 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 SNORA31.22-201ENST00000517204 135 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 SNORA31.23-201ENST00000517219 133 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 ADAM3B-201ENST00000569937 840 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 AC004009.2-201ENST00000623016 728 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 MIR7157-201ENST00000635801 60 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 MTND5P10-201ENST00000603719 1809 ntBASIC1.62□□□□□ -2.15
CCDC88AQ3V6T2 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 MRPL42P4-201ENST00000453267 443 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 AC118282.2-201ENST00000508739 374 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 RNA5SP61-201ENST00000516453 100 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 AC022784.5-201ENST00000522241 437 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 AC125611.1-201ENST00000549563 229 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 MIR3117-201ENST00000584034 78 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 MIR7974-201ENST00000615835 79 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 AL445493.3-201ENST00000619568 477 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 AL118508.4-201ENST00000624142 1176 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 AC080188.3-201ENST00000624842 748 ntBASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC88AQ3V6T2 HMGB1P5-201ENST00000255320 642 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 PGBD4P6-201ENST00000421501 610 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC246680.2-201ENST00000422106 389 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AL355994.1-201ENST00000424379 260 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC092902.1-201ENST00000486999 259 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC105252.1-201ENST00000503089 286 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 LTV1P1-201ENST00000510683 1237 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 MRPS17P9-201ENST00000511924 393 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-1256P-201ENST00000516539 103 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC006518.2-201ENST00000542513 940 ntBASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC88AQ3V6T2 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms