Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC013267.1-201ENST00000458227 267 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 RNA5SP310-201ENST00000459084 116 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC079382.1-201ENST00000493346 557 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 RNU1-143P-201ENST00000516296 146 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 MIR4513-201ENST00000581077 86 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC007363.1-201ENST00000604736 620 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 AL033523.1-201ENST00000605153 153 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 U1.23-201ENST00000610293 146 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 RNU1-68P-201ENST00000615382 146 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC073534.2-201ENST00000620377 381 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 U1.39-201ENST00000621562 146 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 OR5H6-203ENST00000642105 978 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP41Q3LFD5 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC093831.2-201ENST00000624393 3427 ntBASIC3.28□□□□□ -1.89
USP41Q3LFD5 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC027514.1-201ENST00000588561 1603 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 RPL7P26-201ENST00000333817 754 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 RNU6-946P-201ENST00000383878 107 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 Y_RNA.505-201ENST00000384489 102 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 MIR1-2-201ENST00000384961 85 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.27□□□□□ -1.89
USP41Q3LFD5 EEF1A1P41-201ENST00000414667 207 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC114491.1-201ENST00000416095 246 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 SDCBPP3-201ENST00000419629 891 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 HMGB1P27-201ENST00000431429 603 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 TAAR7P-201ENST00000436141 242 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 CBWD4P-201ENST00000445695 655 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.27□□□□□ -1.89
USP41Q3LFD5 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.27□□□□□ -1.89
USP41Q3LFD5 UBE2DNL-203ENST00000474922 222 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC117522.1-201ENST00000509821 380 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC010265.1-201ENST00000513509 211 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 RNU6-506P-201ENST00000516553 94 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
USP41Q3LFD5 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.27□□□□□ -1.89
USP41Q3LFD5 MIR4474-201ENST00000579189 78 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC080078.2-201ENST00000603766 501 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC009161.2-201ENST00000624626 138 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 AC124864.2-201ENST00000624736 186 ntBASIC3.27□□□□□ -1.89
USP41Q3LFD5 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.27□□□□□ -1.89
USP41Q3LFD5 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP41Q3LFD5 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.26□□□□□ -1.89
USP41Q3LFD5 SNORA5B-201ENST00000363786 132 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 RNU6-1103P-201ENST00000384150 107 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 MIR325-201ENST00000385260 98 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
USP41Q3LFD5 RNU2-9P-201ENST00000410194 145 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AL031779.1-201ENST00000415663 330 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 ZNF90P2-204ENST00000419323 1075 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 TMEM167AP1-201ENST00000423409 219 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 DPPA2P1-201ENST00000428060 556 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 MTATP6P16-201ENST00000434543 526 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 HMGN2P20-201ENST00000437531 273 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 RPS15AP9-201ENST00000439856 381 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 PIGFP3-201ENST00000441918 722 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USP41Q3LFD5 SRRM1P2-201ENST00000464531 1192 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.26□□□□□ -1.89
USP41Q3LFD5 RNU6-927P-201ENST00000516199 100 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 RNU6-314P-201ENST00000516574 104 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AC022690.1-201ENST00000526681 550 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AP003033.1-201ENST00000527244 415 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AP003072.2-201ENST00000527756 676 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AP001646.1-201ENST00000527936 915 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 OR4R1P-201ENST00000529879 463 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.26□□□□□ -1.89
USP41Q3LFD5 RPS3AP4-201ENST00000555161 764 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AL391646.1-201ENST00000603860 190 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AL021997.1-201ENST00000605757 193 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AC007998.5-201ENST00000622938 237 ntBASIC3.26□□□□□ -1.89
USP41Q3LFD5 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
USP41Q3LFD5 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.26□□□□□ -1.89
USP41Q3LFD5 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
USP41Q3LFD5 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
USP41Q3LFD5 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP41Q3LFD5 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP41Q3LFD5 U3.6-201ENST00000363622 211 ntBASIC3.25□□□□□ -1.89
USP41Q3LFD5 Y_RNA.159-201ENST00000363674 87 ntBASIC3.25□□□□□ -1.89
USP41Q3LFD5 RNU6-288P-201ENST00000363690 104 ntBASIC3.25□□□□□ -1.89
USP41Q3LFD5 Y_RNA.367-201ENST00000365544 101 ntBASIC3.25□□□□□ -1.89
USP41Q3LFD5 Y_RNA.409-201ENST00000383990 98 ntBASIC3.25□□□□□ -1.89
USP41Q3LFD5 RNU6-74P-201ENST00000384235 107 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms