Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CYCSP2-201ENST00000558168 301 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.49□□□□□ -2.33
COL7A1Q02388 AC003001.2-201ENST00000616294 831 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 AC068831.7-201ENST00000616954 363 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 ZNF702P-202ENST00000434269 1966 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 RNU4-7P-201ENST00000364758 141 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 RNA5SP299-201ENST00000391203 116 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 RNU6-1077P-201ENST00000410506 102 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 RPL30P13-201ENST00000418873 348 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.48□□□□□ -2.33
COL7A1Q02388 PTENP1-201ENST00000447117 1215 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
COL7A1Q02388 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC0.48□□□□□ -2.33
COL7A1Q02388 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
COL7A1Q02388 OR5H6-203ENST00000642105 978 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 RNU6-1126P-201ENST00000384002 107 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 CIR1P3-201ENST00000405137 479 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.48□□□□□ -2.33
COL7A1Q02388 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 AC093716.1-201ENST00000435923 377 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 AL035666.1-201ENST00000446195 348 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 TRBVB-201ENST00000477100 408 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 RN7SKP5-201ENST00000517045 272 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 AP003484.1-201ENST00000530974 250 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 OSBPL9P3-201ENST00000534523 595 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 SNRPGP17-201ENST00000603780 214 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
COL7A1Q02388 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC0.48□□□□□ -2.33
COL7A1Q02388 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.48□□□□□ -2.33
COL7A1Q02388 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.48□□□□□ -2.33
COL7A1Q02388 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC0.48□□□□□ -2.33
COL7A1Q02388 AP003485.1-201ENST00000625093 753 ntBASIC0.48□□□□□ -2.33
COL7A1Q02388 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
COL7A1Q02388 SNORA38-201ENST00000363946 132 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 RNU6-1181P-201ENST00000384191 106 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AL133384.1-201ENST00000412744 351 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AL161449.1-201ENST00000414531 1199 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 SNX3P1X-201ENST00000414887 175 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 SNRPEP7-201ENST00000438350 220 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AL353689.1-201ENST00000438895 199 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AL135752.1-201ENST00000479477 471 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 LARP7P4-201ENST00000481075 878 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC098591.2-201ENST00000510152 315 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 RNU6-928P-201ENST00000516876 104 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC109635.4-202ENST00000531666 412 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 MTND2P17-201ENST00000550281 688 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 COX6CP3-201ENST00000580869 223 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC021646.1-201ENST00000605469 484 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
COL7A1Q02388 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.47□□□□□ -2.33
COL7A1Q02388 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
COL7A1Q02388 RNA5SP105-201ENST00000391123 113 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AL589994.1-201ENST00000404962 340 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 ARL2BPP3-201ENST00000421226 480 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC092648.1-201ENST00000425870 423 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC0.47□□□□□ -2.33
COL7A1Q02388 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC0.47□□□□□ -2.33
COL7A1Q02388 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.47□□□□□ -2.33
COL7A1Q02388 RABEPKP1-201ENST00000440529 1026 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC097493.1-201ENST00000463958 372 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 OARD1-209ENST00000471367 401 ntTSL 2 BASIC0.47□□□□□ -2.33
COL7A1Q02388 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
COL7A1Q02388 AC104997.1-201ENST00000519761 717 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC008739.2-201ENST00000597006 317 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC0.47□□□□□ -2.33
COL7A1Q02388 NUTF2P8-201ENST00000604593 363 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC108676.2-201ENST00000605225 163 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 AC004241.3-201ENST00000611728 517 ntBASIC0.47□□□□□ -2.33
COL7A1Q02388 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
COL7A1Q02388 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
COL7A1Q02388 MIR518A2-201ENST00000384966 87 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 C1DP3-201ENST00000455013 423 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 snoU109.1-201ENST00000459339 135 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.46□□□□□ -2.34
COL7A1Q02388 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC0.46□□□□□ -2.34
COL7A1Q02388 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC0.46□□□□□ -2.34
COL7A1Q02388 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.46□□□□□ -2.34
COL7A1Q02388 LINC00933-203ENST00000559812 219 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 AC068620.3-201ENST00000602749 560 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
COL7A1Q02388 MIR6866-201ENST00000638146 69 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.46□□□□□ -2.34
COL7A1Q02388 SDAD1P2-201ENST00000441308 2028 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 SNORA81-201ENST00000408493 178 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 UBE2FP1-201ENST00000416536 447 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.46□□□□□ -2.34
COL7A1Q02388 AC010301.1-201ENST00000473936 355 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 TRBV8-1-201ENST00000481590 279 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 AC108157.1-201ENST00000510511 539 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 EIF4EP5-201ENST00000528228 640 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms