Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA4Q00056 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXA4Q00056 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA4Q00056 NOL8P1-201ENST00000508336 3529 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXA4Q00056 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
HOXA4Q00056 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 LDHAL6CP-202ENST00000550738 3224 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AL136964.1-201ENST00000622038 2990 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU6-593P-201ENST00000364716 112 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 Y_RNA.404-201ENST00000383978 102 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU6-1181P-201ENST00000384191 106 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 Y_RNA.480-201ENST00000384364 102 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU6-306P-201ENST00000384617 107 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU6-1179P-201ENST00000384667 107 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 MIR1193-201ENST00000408109 78 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU2-3P-201ENST00000410144 191 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNA5SP306-201ENST00000411087 107 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU6-607P-201ENST00000411283 108 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA4Q00056 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA4Q00056 HMGB1P9-201ENST00000429856 646 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA4Q00056 RPS29P7-201ENST00000439662 171 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA4Q00056 AC084198.1-201ENST00000477747 402 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RPL31P60-201ENST00000478450 367 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RPL7P42-201ENST00000481005 679 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RPL31P61-201ENST00000496160 376 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC025445.1-201ENST00000502728 300 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC017037.1-201ENST00000508460 471 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC096745.1-201ENST00000509945 370 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXA4Q00056 SNORA31.8-201ENST00000516327 108 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 SCARNA15.2-201ENST00000516409 127 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 Vault.1-201ENST00000516474 102 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU6-1256P-201ENST00000516539 103 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU6-143P-201ENST00000516942 93 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 RNA5SP179-201ENST00000517284 121 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXA4Q00056 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA4Q00056 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA4Q00056 AC004024.1-201ENST00000549244 247 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA4Q00056 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA4Q00056 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 RN7SL703P-201ENST00000578485 302 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 MIR1273C-201ENST00000578669 77 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC100830.2-201ENST00000581636 240 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXA4Q00056 RNU6-85P-201ENST00000605989 107 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA4Q00056 RMST_9.1-201ENST00000619945 193 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 MIR7702-201ENST00000621931 59 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC092608.2-201ENST00000624427 218 ntBASIC3.36□□□□□ -1.87
HOXA4Q00056 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA4Q00056 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA4Q00056 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXA4Q00056 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA4Q00056 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA4Q00056 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA4Q00056 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
HOXA4Q00056 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXA4Q00056 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HOXA4Q00056 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXA4Q00056 Y_RNA.5-201ENST00000362334 102 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 Y_RNA.28-201ENST00000362554 111 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 SNORA75B-201ENST00000384053 137 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 RNU6-214P-201ENST00000384130 107 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA4Q00056 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA4Q00056 Y_RNA.594-201ENST00000410373 140 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AL353621.1-201ENST00000418219 243 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXA4Q00056 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXA4Q00056 AC026801.1-201ENST00000497178 464 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AL359273.1-201ENST00000510918 627 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXA4Q00056 RNU1-86P-201ENST00000516108 154 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 RNU1-107P-201ENST00000516617 154 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 RNU1-54P-201ENST00000517181 120 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 RNU6-1073P-201ENST00000517182 106 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AC022634.1-201ENST00000520765 532 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AC087369.1-201ENST00000520775 996 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXA4Q00056 DNAJC8P1-201ENST00000554535 372 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms