Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 Y_RNA.460-201ENST00000384255 102 ntBASIC3.28□□□□□ -1.88
SOX2P48431 RNU6-1011P-201ENST00000384668 107 ntBASIC3.28□□□□□ -1.88
SOX2P48431 Z98941.1-201ENST00000407764 100 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX2P48431 AC245028.1-201ENST00000423259 256 ntBASIC3.28□□□□□ -1.88
SOX2P48431 RPL23AP69-201ENST00000431134 458 ntBASIC3.28□□□□□ -1.88
SOX2P48431 GPM6BP2-201ENST00000432046 144 ntBASIC3.28□□□□□ -1.88
SOX2P48431 NDUFB1P1-201ENST00000435191 180 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AC005019.1-201ENST00000436455 431 ntBASIC3.28□□□□□ -1.88
SOX2P48431 PIGFP3-201ENST00000441918 722 ntBASIC3.28□□□□□ -1.88
SOX2P48431 RPS24P13-201ENST00000442520 397 ntBASIC3.28□□□□□ -1.88
SOX2P48431 HSFY6P-201ENST00000445573 403 ntBASIC3.28□□□□□ -1.88
SOX2P48431 RPS29P31-201ENST00000446147 164 ntBASIC3.28□□□□□ -1.88
SOX2P48431 GPM6BP1-201ENST00000446387 144 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX2P48431 AC233279.1-201ENST00000455300 423 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AL136097.1-201ENST00000456945 913 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AC026979.1-201ENST00000492525 396 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX2P48431 SNORA31.9-201ENST00000516429 84 ntBASIC3.28□□□□□ -1.88
SOX2P48431 Y_RNA.682-201ENST00000516457 100 ntBASIC3.28□□□□□ -1.88
SOX2P48431 RN7SKP289-201ENST00000517244 295 ntBASIC3.28□□□□□ -1.88
SOX2P48431 CDH12P4-201ENST00000517835 295 ntBASIC3.28□□□□□ -1.88
SOX2P48431 CDH12P3-201ENST00000517935 295 ntBASIC3.28□□□□□ -1.88
SOX2P48431 CDH12P1-201ENST00000518435 295 ntBASIC3.28□□□□□ -1.88
SOX2P48431 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX2P48431 CYCSP27-201ENST00000527643 293 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX2P48431 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.28□□□□□ -1.88
SOX2P48431 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.28□□□□□ -1.88
SOX2P48431 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX2P48431 AL157871.3-201ENST00000557231 293 ntBASIC3.28□□□□□ -1.88
SOX2P48431 MIR1273C-201ENST00000578669 77 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AC053481.4-201ENST00000583164 216 ntBASIC3.28□□□□□ -1.88
SOX2P48431 MIR5096-201ENST00000583713 70 ntBASIC3.28□□□□□ -1.88
SOX2P48431 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX2P48431 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.28□□□□□ -1.88
SOX2P48431 AC113139.1-201ENST00000605049 239 ntBASIC3.28□□□□□ -1.88
SOX2P48431 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SOX2P48431 RNU4-89P-201ENST00000607443 133 ntBASIC3.28□□□□□ -1.88
SOX2P48431 AC090574.1-201ENST00000623186 233 ntBASIC3.28□□□□□ -1.88
SOX2P48431 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX2P48431 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SOX2P48431 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX2P48431 RLIMP1-201ENST00000339626 1680 ntBASIC3.27□□□□□ -1.89
SOX2P48431 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.27□□□□□ -1.89
SOX2P48431 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
SOX2P48431 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX2P48431 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 Y_RNA.58-201ENST00000362807 102 ntBASIC3.27□□□□□ -1.89
SOX2P48431 Y_RNA.67-201ENST00000362870 100 ntBASIC3.27□□□□□ -1.89
SOX2P48431 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.27□□□□□ -1.89
SOX2P48431 Y_RNA.154-201ENST00000363624 102 ntBASIC3.27□□□□□ -1.89
SOX2P48431 RNY3P1-201ENST00000365085 102 ntBASIC3.27□□□□□ -1.89
SOX2P48431 RNY3-201ENST00000365484 102 ntBASIC3.27□□□□□ -1.89
SOX2P48431 RNU6-395P-201ENST00000365662 106 ntBASIC3.27□□□□□ -1.89
SOX2P48431 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 DEFB109C-201ENST00000382575 264 ntBASIC3.27□□□□□ -1.89
SOX2P48431 DEFB109B-201ENST00000382656 264 ntBASIC3.27□□□□□ -1.89
SOX2P48431 Y_RNA.474-201ENST00000384341 102 ntBASIC3.27□□□□□ -1.89
SOX2P48431 Y_RNA.480-201ENST00000384364 102 ntBASIC3.27□□□□□ -1.89
SOX2P48431 Y_RNA.490-201ENST00000384413 102 ntBASIC3.27□□□□□ -1.89
SOX2P48431 MIR578-201ENST00000384828 96 ntBASIC3.27□□□□□ -1.89
SOX2P48431 MIR493-201ENST00000385254 89 ntBASIC3.27□□□□□ -1.89
SOX2P48431 MIR450B-201ENST00000401182 78 ntBASIC3.27□□□□□ -1.89
SOX2P48431 SNORA57.3-201ENST00000411095 141 ntBASIC3.27□□□□□ -1.89
SOX2P48431 AC016397.1-201ENST00000412463 242 ntBASIC3.27□□□□□ -1.89
SOX2P48431 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.27□□□□□ -1.89
SOX2P48431 ARF4P2-201ENST00000430209 526 ntBASIC3.27□□□□□ -1.89
SOX2P48431 AL360271.2-201ENST00000447710 161 ntBASIC3.27□□□□□ -1.89
SOX2P48431 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.27□□□□□ -1.89
SOX2P48431 RPL7P43-201ENST00000478876 753 ntBASIC3.27□□□□□ -1.89
SOX2P48431 KC877373.1-201ENST00000479066 408 ntBASIC3.27□□□□□ -1.89
SOX2P48431 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.27□□□□□ -1.89
SOX2P48431 RNU6-1069P-201ENST00000516612 133 ntBASIC3.27□□□□□ -1.89
SOX2P48431 RNU6-1088P-201ENST00000516850 104 ntBASIC3.27□□□□□ -1.89
SOX2P48431 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX2P48431 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.27□□□□□ -1.89
SOX2P48431 HSPE1P5-201ENST00000561489 272 ntBASIC3.27□□□□□ -1.89
SOX2P48431 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.27□□□□□ -1.89
SOX2P48431 MIR4738-201ENST00000579134 87 ntBASIC3.27□□□□□ -1.89
SOX2P48431 AC093227.2-201ENST00000589357 285 ntBASIC3.27□□□□□ -1.89
SOX2P48431 AL353621.2-201ENST00000605340 133 ntBASIC3.27□□□□□ -1.89
SOX2P48431 MIR6820-201ENST00000611508 62 ntBASIC3.27□□□□□ -1.89
SOX2P48431 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX2P48431 MIR8058-201ENST00000615737 89 ntBASIC3.27□□□□□ -1.89
SOX2P48431 XIST_intron.1-201ENST00000619444 68 ntBASIC3.27□□□□□ -1.89
SOX2P48431 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX2P48431 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX2P48431 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
SOX2P48431 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SOX2P48431 AC007785.2-201ENST00000598627 1916 ntBASIC3.27□□□□□ -1.89
SOX2P48431 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
SOX2P48431 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms