Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL450336.1-201ENST00000605180 586 ntBASIC1.22□□□□□ -2.21
CUX1P39880 AL133370.2-201ENST00000619934 439 ntBASIC1.22□□□□□ -2.21
CUX1P39880 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.22□□□□□ -2.21
CUX1P39880 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.21□□□□□ -2.22
CUX1P39880 AC244453.4-201ENST00000419150 388 ntBASIC1.21□□□□□ -2.22
CUX1P39880 AC246680.2-201ENST00000422106 389 ntBASIC1.21□□□□□ -2.22
CUX1P39880 TMEM167AP1-201ENST00000423409 219 ntBASIC1.21□□□□□ -2.22
CUX1P39880 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.21□□□□□ -2.22
CUX1P39880 Z80107.1-201ENST00000436830 412 ntBASIC1.21□□□□□ -2.22
CUX1P39880 AC004383.1-201ENST00000438135 289 ntBASIC1.21□□□□□ -2.22
CUX1P39880 AL645638.1-201ENST00000440519 361 ntBASIC1.21□□□□□ -2.22
CUX1P39880 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC1.21□□□□□ -2.22
CUX1P39880 NAP1L1P3-201ENST00000462291 880 ntBASIC1.21□□□□□ -2.22
CUX1P39880 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.21□□□□□ -2.22
CUX1P39880 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.21□□□□□ -2.22
CUX1P39880 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC1.21□□□□□ -2.22
CUX1P39880 MIR3616-201ENST00000584070 92 ntBASIC1.21□□□□□ -2.22
CUX1P39880 AC025165.5-201ENST00000602802 578 ntBASIC1.21□□□□□ -2.22
CUX1P39880 MIR6835-201ENST00000621552 64 ntBASIC1.21□□□□□ -2.22
CUX1P39880 AC004808.1-201ENST00000627671 721 ntBASIC1.21□□□□□ -2.22
CUX1P39880 RNU6-1235P-201ENST00000384559 107 ntBASIC1.2□□□□□ -2.22
CUX1P39880 RNU6-19P-201ENST00000384718 107 ntBASIC1.2□□□□□ -2.22
CUX1P39880 AL513475.1-201ENST00000406602 315 ntBASIC1.2□□□□□ -2.22
CUX1P39880 SNORA81-201ENST00000408493 178 ntBASIC1.2□□□□□ -2.22
CUX1P39880 MIR1197-201ENST00000408818 88 ntBASIC1.2□□□□□ -2.22
CUX1P39880 MTCYBP29-201ENST00000436327 1006 ntBASIC1.2□□□□□ -2.22
CUX1P39880 RNU6-498P-201ENST00000459468 107 ntBASIC1.2□□□□□ -2.22
CUX1P39880 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC1.2□□□□□ -2.22
CUX1P39880 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.2□□□□□ -2.22
CUX1P39880 AL137003.2-201ENST00000606924 2538 ntBASIC1.2□□□□□ -2.22
CUX1P39880 VN1R36P-201ENST00000414936 291 ntBASIC1.2□□□□□ -2.22
CUX1P39880 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.2□□□□□ -2.22
CUX1P39880 AC087884.1-201ENST00000469738 328 ntBASIC1.2□□□□□ -2.22
CUX1P39880 AP001960.1-201ENST00000506494 658 ntBASIC1.2□□□□□ -2.22
CUX1P39880 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.2□□□□□ -2.22
CUX1P39880 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC1.2□□□□□ -2.22
CUX1P39880 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC1.2□□□□□ -2.22
CUX1P39880 AC040174.2-201ENST00000602701 465 ntBASIC1.2□□□□□ -2.22
CUX1P39880 AL356473.1-201ENST00000406203 1408 ntBASIC1.19□□□□□ -2.22
CUX1P39880 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CUX1P39880 SNORA68.1-201ENST00000364537 132 ntBASIC1.19□□□□□ -2.22
CUX1P39880 Y_RNA.471-201ENST00000384312 102 ntBASIC1.19□□□□□ -2.22
CUX1P39880 RNU6-837P-201ENST00000391056 108 ntBASIC1.19□□□□□ -2.22
CUX1P39880 SSXP10-201ENST00000402595 565 ntBASIC1.19□□□□□ -2.22
CUX1P39880 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC1.19□□□□□ -2.22
CUX1P39880 RPL23AP6-201ENST00000446637 472 ntBASIC1.19□□□□□ -2.22
CUX1P39880 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.19□□□□□ -2.22
CUX1P39880 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC1.19□□□□□ -2.22
CUX1P39880 AC106900.2-201ENST00000604994 317 ntBASIC1.19□□□□□ -2.22
CUX1P39880 AC025588.4-201ENST00000615802 908 ntBASIC1.19□□□□□ -2.22
CUX1P39880 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.19□□□□□ -2.22
CUX1P39880 MIR126-201ENST00000362291 85 ntBASIC1.18□□□□□ -2.22
CUX1P39880 U3.20-201ENST00000390909 217 ntBASIC1.18□□□□□ -2.22
CUX1P39880 RNU6ATAC31P-201ENST00000408513 126 ntBASIC1.18□□□□□ -2.22
CUX1P39880 MRPL35P3-201ENST00000421557 364 ntBASIC1.18□□□□□ -2.22
CUX1P39880 EIF4EP4-201ENST00000424916 578 ntBASIC1.18□□□□□ -2.22
CUX1P39880 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.18□□□□□ -2.22
CUX1P39880 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.18□□□□□ -2.22
CUX1P39880 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.18□□□□□ -2.22
CUX1P39880 RNU2-19P-201ENST00000517288 84 ntBASIC1.18□□□□□ -2.22
CUX1P39880 AC087481.2-201ENST00000565492 330 ntBASIC1.18□□□□□ -2.22
CUX1P39880 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.18□□□□□ -2.22
CUX1P39880 AP001330.4-201ENST00000604350 154 ntBASIC1.18□□□□□ -2.22
CUX1P39880 AC135507.1-201ENST00000607214 561 ntBASIC1.18□□□□□ -2.22
CUX1P39880 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
CUX1P39880 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
CUX1P39880 RNU6-16P-201ENST00000384385 107 ntBASIC1.17□□□□□ -2.22
CUX1P39880 MIR147B-201ENST00000390185 80 ntBASIC1.17□□□□□ -2.22
CUX1P39880 SSR1P1-201ENST00000407630 814 ntBASIC1.17□□□□□ -2.22
CUX1P39880 RNU4-78P-201ENST00000410940 126 ntBASIC1.17□□□□□ -2.22
CUX1P39880 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.17□□□□□ -2.22
CUX1P39880 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.17□□□□□ -2.22
CUX1P39880 AC117454.1-201ENST00000491120 168 ntBASIC1.17□□□□□ -2.22
CUX1P39880 AK3P2-201ENST00000507976 429 ntBASIC1.17□□□□□ -2.22
CUX1P39880 TPT1P8-201ENST00000510120 555 ntBASIC1.17□□□□□ -2.22
CUX1P39880 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.17□□□□□ -2.22
CUX1P39880 AC084033.1-201ENST00000550830 633 ntBASIC1.17□□□□□ -2.22
CUX1P39880 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.17□□□□□ -2.22
CUX1P39880 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.17□□□□□ -2.22
CUX1P39880 AC005786.1-201ENST00000588553 154 ntBASIC1.17□□□□□ -2.22
CUX1P39880 AC012213.4-201ENST00000606457 354 ntBASIC1.17□□□□□ -2.22
CUX1P39880 AL627230.5-201ENST00000619807 58 ntBASIC1.17□□□□□ -2.22
CUX1P39880 AC008555.8-201ENST00000623602 2168 ntBASIC1.17□□□□□ -2.22
CUX1P39880 RNU1-105P-201ENST00000363470 161 ntBASIC1.16□□□□□ -2.22
CUX1P39880 RN7SKP61-201ENST00000410642 295 ntBASIC1.16□□□□□ -2.22
CUX1P39880 AC099548.1-201ENST00000421443 426 ntBASIC1.16□□□□□ -2.22
CUX1P39880 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.16□□□□□ -2.22
CUX1P39880 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.16□□□□□ -2.22
CUX1P39880 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.16□□□□□ -2.22
CUX1P39880 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.16□□□□□ -2.22
CUX1P39880 RPL30P6-201ENST00000475925 342 ntBASIC1.16□□□□□ -2.22
CUX1P39880 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.16□□□□□ -2.22
CUX1P39880 AC108157.1-201ENST00000510511 539 ntBASIC1.16□□□□□ -2.22
CUX1P39880 AC067942.3-201ENST00000512025 362 ntBASIC1.16□□□□□ -2.22
CUX1P39880 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
CUX1P39880 CR848007.1-201ENST00000442354 1699 ntBASIC1.16□□□□□ -2.22
CUX1P39880 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.15□□□□□ -2.22
CUX1P39880 MTCO3P12-201ENST00000416718 547 ntBASIC1.15□□□□□ -2.22
CUX1P39880 RPS15AP27-201ENST00000449183 343 ntBASIC1.15□□□□□ -2.22
CUX1P39880 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.15□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms