Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIG1P18858 FAM91A3P-201ENST00000456826 2544 ntBASIC4.92□□□□□ -1.62
LIG1P18858 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG1P18858 RNA5SP388-201ENST00000362584 119 ntBASIC4.92□□□□□ -1.62
LIG1P18858 Y_RNA.106-201ENST00000363189 100 ntBASIC4.92□□□□□ -1.62
LIG1P18858 RNU6-371P-201ENST00000364283 108 ntBASIC4.92□□□□□ -1.62
LIG1P18858 Y_RNA.396-201ENST00000383949 103 ntBASIC4.92□□□□□ -1.62
LIG1P18858 MIR135A2-201ENST00000384854 100 ntBASIC4.92□□□□□ -1.62
LIG1P18858 MIR548I3-201ENST00000408378 149 ntBASIC4.92□□□□□ -1.62
LIG1P18858 MIR548I1-201ENST00000408810 149 ntBASIC4.92□□□□□ -1.62
LIG1P18858 RNA5SP39-201ENST00000411245 120 ntBASIC4.92□□□□□ -1.62
LIG1P18858 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG1P18858 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG1P18858 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG1P18858 AC011276.1-201ENST00000469688 323 ntBASIC4.92□□□□□ -1.62
LIG1P18858 RNU2-53P-201ENST00000516257 147 ntBASIC4.92□□□□□ -1.62
LIG1P18858 ERHP1-201ENST00000523006 310 ntBASIC4.92□□□□□ -1.62
LIG1P18858 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG1P18858 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG1P18858 HSBP1P1-201ENST00000555205 166 ntBASIC4.92□□□□□ -1.62
LIG1P18858 MIR4284-201ENST00000578924 81 ntBASIC4.92□□□□□ -1.62
LIG1P18858 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG1P18858 HMGN2P28-201ENST00000606102 262 ntBASIC4.92□□□□□ -1.62
LIG1P18858 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG1P18858 MIR4275-201ENST00000636486 87 ntBASIC4.92□□□□□ -1.62
LIG1P18858 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIG1P18858 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIG1P18858 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIG1P18858 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG1P18858 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG1P18858 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG1P18858 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
LIG1P18858 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.91□□□□□ -1.62
LIG1P18858 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.91□□□□□ -1.62
LIG1P18858 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG1P18858 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LIG1P18858 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG1P18858 Y_RNA.447-201ENST00000384184 113 ntBASIC4.91□□□□□ -1.62
LIG1P18858 Y_RNA.552-201ENST00000384665 112 ntBASIC4.91□□□□□ -1.62
LIG1P18858 RNU6-817P-201ENST00000391083 104 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.91□□□□□ -1.62
LIG1P18858 AL137014.1-201ENST00000420490 1226 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AL356387.2-201ENST00000422272 243 ntBASIC4.91□□□□□ -1.62
LIG1P18858 RPS27AP12-201ENST00000429552 465 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.91□□□□□ -1.62
LIG1P18858 AC090774.1-201ENST00000435925 246 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.91□□□□□ -1.62
LIG1P18858 RPL23AP24-201ENST00000458203 385 ntBASIC4.91□□□□□ -1.62
LIG1P18858 RNU7-187P-201ENST00000458985 68 ntBASIC4.91□□□□□ -1.62
LIG1P18858 RNU6-953P-201ENST00000459154 107 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AL592156.1-201ENST00000508758 304 ntBASIC4.91□□□□□ -1.62
LIG1P18858 PARP4P3-201ENST00000510265 317 ntBASIC4.91□□□□□ -1.62
LIG1P18858 SNORA31.3-201ENST00000516029 96 ntBASIC4.91□□□□□ -1.62
LIG1P18858 RNU6-1143P-201ENST00000516125 104 ntBASIC4.91□□□□□ -1.62
LIG1P18858 RNU6-1095P-201ENST00000516148 108 ntBASIC4.91□□□□□ -1.62
LIG1P18858 RN7SKP258-201ENST00000517151 304 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AC007991.1-201ENST00000522680 631 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.91□□□□□ -1.62
LIG1P18858 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.91□□□□□ -1.62
LIG1P18858 AL356218.2-201ENST00000605264 187 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AL450472.3-201ENST00000615578 367 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AC011944.2-201ENST00000624440 683 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AC026951.1-201ENST00000559530 2459 ntBASIC4.91□□□□□ -1.62
LIG1P18858 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.91□□□□□ -1.62
LIG1P18858 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG1P18858 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.91□□□□□ -1.62
LIG1P18858 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG1P18858 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG1P18858 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.9□□□□□ -1.62
LIG1P18858 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.9□□□□□ -1.62
LIG1P18858 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LIG1P18858 RNU6-1155P-201ENST00000363554 107 ntBASIC4.9□□□□□ -1.63
LIG1P18858 Y_RNA.288-201ENST00000364854 92 ntBASIC4.9□□□□□ -1.63
LIG1P18858 RNU6-596P-201ENST00000365395 98 ntBASIC4.9□□□□□ -1.63
LIG1P18858 RNU6-1329P-201ENST00000365664 107 ntBASIC4.9□□□□□ -1.63
LIG1P18858 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
LIG1P18858 MIR517A-201ENST00000385001 87 ntBASIC4.9□□□□□ -1.63
LIG1P18858 MIR3065-201ENST00000390137 79 ntBASIC4.9□□□□□ -1.63
LIG1P18858 RNA5SP306-201ENST00000411087 107 ntBASIC4.9□□□□□ -1.63
LIG1P18858 RPS15AP10-201ENST00000432472 382 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.9□□□□□ -1.63
LIG1P18858 AC004866.2-201ENST00000438285 481 ntBASIC4.9□□□□□ -1.63
LIG1P18858 DYNLT3P2-201ENST00000442517 295 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AC073910.1-201ENST00000445047 438 ntBASIC4.9□□□□□ -1.63
LIG1P18858 HSFY6P-201ENST00000445573 403 ntBASIC4.9□□□□□ -1.63
LIG1P18858 PHBP16-201ENST00000446318 950 ntBASIC4.9□□□□□ -1.63
LIG1P18858 FTH1P25-201ENST00000447665 469 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.9□□□□□ -1.63
LIG1P18858 CEACAMP4-201ENST00000457676 421 ntBASIC4.9□□□□□ -1.63
LIG1P18858 RPL21P41-201ENST00000459863 264 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AC008571.1-201ENST00000467232 300 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.9□□□□□ -1.63
LIG1P18858 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.9□□□□□ -1.63
LIG1P18858 AC079587.1-201ENST00000603846 277 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AC002044.1-201ENST00000606707 158 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.9□□□□□ -1.63
LIG1P18858 AL138825.1-201ENST00000618587 192 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AC078938.1-201ENST00000620993 318 ntBASIC4.9□□□□□ -1.63
LIG1P18858 AC008785.1-201ENST00000624475 456 ntBASIC4.9□□□□□ -1.63
LIG1P18858 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms