Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 DDX10P1-201ENST00000448545 1933 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RNU5F-7P-201ENST00000363696 115 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RNY3P13-201ENST00000365542 102 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RPS4XP3-201ENST00000398541 413 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AL049545.1-201ENST00000401856 572 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 TXNP7-201ENST00000406296 293 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RNU2-36P-201ENST00000410361 191 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 Y_RNA.608-201ENST00000410647 95 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 MTND1P21-201ENST00000412991 285 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RPL21P32-201ENST00000419877 477 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AL451054.2-201ENST00000420896 202 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 NDUFB4P7-201ENST00000423198 363 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 TRIM60P10Y-201ENST00000425589 751 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AL356320.1-201ENST00000429616 163 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC129850.1-201ENST00000436203 508 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 MTND1P30-201ENST00000441241 901 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 MTND2P4-201ENST00000445034 1004 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 BMI1P1-201ENST00000445879 941 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 DDX3P2-201ENST00000446138 111 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 ELOCP30-201ENST00000447108 299 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC010099.1-201ENST00000455434 375 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AL031183.1-201ENST00000457667 207 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 HMGN2P13-201ENST00000476476 274 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RNA5SP471-201ENST00000516971 106 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RNA5SP402-201ENST00000517148 110 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AP001804.3-201ENST00000525146 880 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC007115.1-201ENST00000546853 234 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC068135.2-201ENST00000569293 1028 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC110760.3-201ENST00000598794 467 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AL358072.1-201ENST00000604156 575 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC121247.2-201ENST00000604776 136 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 RPL23AP88-201ENST00000605759 454 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC092140.2-201ENST00000618027 521 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC006338.1-201ENST00000618453 749 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 AC078883.4-201ENST00000623218 367 ntBASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
TRAV40A0A0B4J280 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AC008568.2-201ENST00000623862 2313 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 RNU5A-8P-201ENST00000364102 114 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 RNU6-14P-201ENST00000384630 106 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 MIR1302-8-201ENST00000408342 128 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 RN7SKP223-201ENST00000410582 62 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 RNA5SP492-201ENST00000411330 114 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AC007064.1-201ENST00000412238 351 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 BTF3L4P3-201ENST00000418879 476 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 Z99497.1-201ENST00000421282 135 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AL353777.1-201ENST00000425552 326 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AL589872.1-201ENST00000426602 288 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AL139415.2-201ENST00000431968 163 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 CR769767.1-201ENST00000436337 346 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 RPL22P17-201ENST00000438729 315 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 PIGFP3-201ENST00000441918 722 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 TAF9P1-201ENST00000445421 515 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 MTND2P24-201ENST00000453434 806 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 TAF9P2-201ENST00000454958 515 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 YWHAEP4-201ENST00000505390 198 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 ARL4AP2-201ENST00000507378 601 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 SCARNA15.2-201ENST00000516409 127 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 RNU6-201P-201ENST00000517100 61 ntBASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.91□□□□□ -2.1
TRAV40A0A0B4J280 DEFB108A-201ENST00000530110 222 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms