Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 SDCBPP3-201ENST00000419629 891 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 UBE2D3P2-201ENST00000424409 445 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 RPL21P40-201ENST00000428586 483 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 GPR143P-201ENST00000434155 205 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 CYCSP32-201ENST00000440548 321 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 RPL21P8-201ENST00000465083 535 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AC116353.2-201ENST00000505332 712 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 RNA5SP385-201ENST00000515947 110 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 SNORA31.22-201ENST00000517204 135 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AL157687.1-201ENST00000554853 619 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AL512360.1-201ENST00000555346 234 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AL359212.1-201ENST00000556608 614 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AC025678.1-201ENST00000567861 338 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AC012507.3-201ENST00000603556 477 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AC007363.1-201ENST00000604736 620 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AC008277.2-201ENST00000605196 797 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AL591516.1-201ENST00000611326 274 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 AC005609.4-201ENST00000625071 447 ntBASIC3.34□□□□□ -1.87
SNX9Q9Y5X1 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
SNX9Q9Y5X1 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.34□□□□□ -1.88
SNX9Q9Y5X1 AL353743.1-202ENST00000431724 1695 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RNU6-1120P-201ENST00000362988 108 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RNU6-1085P-201ENST00000363576 107 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RNY1P12-201ENST00000364251 105 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.402-201ENST00000383972 102 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RNU6-1158P-201ENST00000391167 107 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RPS3AP24-201ENST00000407896 734 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RNU2-43P-201ENST00000410306 190 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 MTCO1P39-201ENST00000426148 480 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC079780.1-201ENST00000428259 207 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 MTATP6P30-201ENST00000443540 664 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AL162389.1-201ENST00000449233 177 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 FDX1P2-201ENST00000450769 375 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RNU6-420P-201ENST00000458780 107 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RPS29P25-201ENST00000481709 171 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 MTND4LP22-201ENST00000508209 276 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 RNA5SP341-201ENST00000516261 117 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC100870.1-201ENST00000522035 505 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC123904.3-201ENST00000547218 814 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AL512310.1-201ENST00000548639 172 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 FAM60BP-201ENST00000578364 658 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 MIR4506-201ENST00000584693 77 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC098848.2-201ENST00000588023 330 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AP000907.4-201ENST00000604143 237 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AL162274.2-201ENST00000614406 332 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC002553.4-201ENST00000616896 331 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AL603758.1-201ENST00000618654 241 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 MIR622-201ENST00000638396 96 ntBASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SNX9Q9Y5X1 MIR148B-201ENST00000362252 99 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 MIR422A-201ENST00000362286 90 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 RNU6-223P-201ENST00000362830 107 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.88-201ENST00000363029 99 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 RNU6-173P-201ENST00000364215 104 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 RNU5E-6P-201ENST00000365574 115 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.381-201ENST00000365666 102 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 MIR558-201ENST00000384920 94 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 MIR128-1-201ENST00000384921 82 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 SNORD67-201ENST00000390833 111 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 SNORA48.2-201ENST00000390926 124 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 SNORA48.5-201ENST00000391143 135 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC110754.1-201ENST00000399740 601 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 RNU2-36P-201ENST00000410361 191 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 UBE2FP1-201ENST00000416536 447 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 MTATP6P4-201ENST00000427725 675 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 OR2AS1P-201ENST00000427827 319 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC004866.2-201ENST00000438285 481 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC234775.1-201ENST00000454247 670 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC006483.1-201ENST00000487308 313 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC093278.1-201ENST00000494700 600 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms