Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORD70.1-201ENST00000391007 85 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RNA5SP332-201ENST00000391063 115 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 SNORD66.1-201ENST00000391230 76 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RNU2-21P-201ENST00000410368 188 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RNU6-387P-201ENST00000411331 105 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AL451074.5-201ENST00000415894 435 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC108032.1-201ENST00000416706 207 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RPL36P19-201ENST00000430744 301 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 MTCO3P29-201ENST00000432119 779 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AL356535.1-201ENST00000440335 398 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC016696.1-201ENST00000446949 318 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RNU7-59P-201ENST00000459101 61 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC093853.1-201ENST00000515689 483 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RNU6-397P-201ENST00000516226 104 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 IGLVIV-65-201ENST00000517313 360 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RNU6-323P-201ENST00000521915 107 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AP003733.2-201ENST00000529409 171 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC026371.1-201ENST00000551867 419 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC010620.2-201ENST00000600135 313 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC113403.1-201ENST00000604910 193 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RN7SL722P-201ENST00000617780 284 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RN7SL565P-201ENST00000618246 284 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 MIR7703-201ENST00000620784 77 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AC130454.1-201ENST00000622948 401 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 ZNF33CP-201ENST00000432492 2030 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 LINC02471-203ENST00000641941 4752 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 RNU4-42P-201ENST00000364738 142 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 Y_RNA.399-201ENST00000383955 105 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 RPL21P109-201ENST00000422213 475 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 FAR2P4-202ENST00000425399 584 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AC097713.2-201ENST00000430199 356 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AL158071.1-201ENST00000430315 461 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 MYL8P-204ENST00000431574 518 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AL133396.1-201ENST00000432048 687 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AC004383.1-201ENST00000438135 289 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 CEACAMP9-201ENST00000442990 513 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 NEFMP1-201ENST00000443423 1006 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 PHBP16-201ENST00000446318 950 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 NDUFB1P2-201ENST00000449477 176 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AL138752.1-201ENST00000452964 351 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 RNU7-167P-201ENST00000459160 62 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AC069499.1-201ENST00000489433 509 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AC096745.1-201ENST00000509945 370 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AC108078.2-201ENST00000510750 236 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 RNU6-897P-201ENST00000517135 105 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AL121576.1-201ENST00000556055 276 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 HMGN2P28-201ENST00000606102 262 ntBASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC39Q9UFE4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AC011978.2-201ENST00000569835 2054 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 RNY1-201ENST00000364228 113 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 SNORA23-201ENST00000365128 182 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 CYB5AP4-201ENST00000396692 399 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 UBE2FP1-201ENST00000416536 447 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 RPL21P112-201ENST00000434403 463 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 LINC01399-202ENST00000458450 244 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AC007686.1-201ENST00000488511 463 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AL139099.1-201ENST00000497398 403 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 RBBP4P6-201ENST00000508098 202 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AC007991.1-201ENST00000522680 631 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AC012443.1-201ENST00000605605 231 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AC009570.1-201ENST00000609599 745 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 MIR486-1-201ENST00000612171 68 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 MFSD8-216ENST00000641147 4009 ntBASIC4.86□□□□□ -1.63
CCDC39Q9UFE4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms