Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AL139395.1-201ENST00000603662 160 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC098826.3-201ENST00000603823 466 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 SNORA62.6-201ENST00000606322 83 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC012603.1-201ENST00000606424 528 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC103710.3-201ENST00000608157 948 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AL121757.2-201ENST00000611223 313 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 U2.17-201ENST00000611454 95 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AL713922.2-201ENST00000619384 716 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AL133216.2-202ENST00000634512 349 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 RNU6-1167P-201ENST00000363227 94 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 RNU6-434P-201ENST00000384376 107 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 EIF4E2P1-201ENST00000393781 255 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 NCOR1P3-201ENST00000420479 303 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AL356867.1-201ENST00000429623 299 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AL592045.1-201ENST00000429867 352 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 PRSS3P4-201ENST00000453323 162 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 RPS20P22-201ENST00000473700 357 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AC009901.1-201ENST00000506703 541 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 RNU6-277P-201ENST00000516272 106 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 Y_RNA.691-201ENST00000516611 103 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AP004242.1-201ENST00000533701 349 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 MTCO3P23-201ENST00000561363 289 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 MIR3942-201ENST00000585264 109 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AL161798.1-201ENST00000604630 131 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AC106900.2-201ENST00000604994 317 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 ATP1B3P1-201ENST00000605365 821 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AL022345.1-201ENST00000607292 135 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AC128687.2-201ENST00000609657 566 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 C2orf27A-204ENST00000623058 969 ntBASIC3.89□□□□□ -1.79
TDP1Q9NUW8 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
TDP1Q9NUW8 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 MAPK10-253ENST00000641010 4072 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 RNU6-1252P-201ENST00000363054 104 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 SNORD113-7-201ENST00000363762 77 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 Y_RNA.301-201ENST00000364990 103 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 ATP5A1P2-201ENST00000412323 255 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 NDUFA5P4-201ENST00000436704 385 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 SNORA71B-202ENST00000439232 272 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 RPS24P13-201ENST00000442520 397 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 RNU7-167P-201ENST00000459160 62 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 RPL21P41-201ENST00000459863 264 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 SUMO2P6-201ENST00000505273 288 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 RAC1P2-201ENST00000511164 579 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AC026726.1-201ENST00000512859 601 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AC104136.1-201ENST00000512969 394 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 FTH1P9-201ENST00000513251 355 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 OR5D17P-201ENST00000531492 978 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 MIR3922-201ENST00000585192 84 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AC007687.1-201ENST00000602704 304 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 SRGNP1-201ENST00000603392 451 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AC107294.1-201ENST00000609524 467 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AC104237.2-201ENST00000612456 443 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 Z99571.1-201ENST00000636677 394 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 MIR1302-1-201ENST00000637932 143 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 LINC02471-203ENST00000641941 4752 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 AC006026.1-201ENST00000444025 1803 ntBASIC3.88□□□□□ -1.79
TDP1Q9NUW8 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
TDP1Q9NUW8 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms