Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 MIR3670-3-201ENST00000584855 65 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 HMGN2P15-201ENST00000585707 270 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AC012065.4-201ENST00000602445 679 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AC107294.1-201ENST00000609524 467 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 MIR3670-4-201ENST00000612260 65 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AL020991.1-201ENST00000612314 373 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AL137003.2-201ENST00000606924 2538 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 RNU5E-6P-201ENST00000365574 115 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AL021407.1-201ENST00000404531 386 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 RNU2-36P-201ENST00000410361 191 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 Y_RNA.598-201ENST00000410480 95 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 RPS15AP12-201ENST00000419498 388 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 MTND2P18-201ENST00000419962 1030 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC009414.1-201ENST00000427200 443 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 GPM6BP2-201ENST00000432046 144 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 GPM6BP1-201ENST00000446387 144 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 SNRPFP4-201ENST00000456366 242 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 RPL26P9-201ENST00000457466 433 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 UBE2DNL-203ENST00000474922 222 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC011825.1-201ENST00000484967 388 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AP003467.2-201ENST00000520175 319 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AP003181.2-201ENST00000528941 181 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 EIF4BP1-201ENST00000554881 351 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC109446.2-201ENST00000567872 497 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 MIR4446-201ENST00000578505 67 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 UBL5P2-201ENST00000583788 219 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.66□□□□□ -1.98
DDX28Q9NUL7 MTND4LP5-201ENST00000605152 292 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC008498.1-201ENST00000613012 531 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 AC025594.3-201ENST00000613068 790 ntBASIC2.66□□□□□ -1.98
DDX28Q9NUL7 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
DDX28Q9NUL7 RNU6-512P-201ENST00000364438 103 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 MIR767-201ENST00000390228 109 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AL139095.1-201ENST00000404326 391 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 RNU2-68P-201ENST00000410878 191 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC137499.1-201ENST00000427602 88 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 HMGB3P12-201ENST00000438745 556 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 RPS24P13-201ENST00000442520 397 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 WASF1P1-201ENST00000447560 1131 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 FABP5P15-201ENST00000453566 214 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 MTCO2P29-201ENST00000465212 189 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AP000852.1-201ENST00000472460 573 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 RPL36AP51-201ENST00000487216 318 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 SUMO2P6-201ENST00000505273 288 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC008716.1-201ENST00000511084 513 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 RNA5SP165-201ENST00000517142 115 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 SUB1P1-201ENST00000524415 382 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AP003122.4-201ENST00000530980 758 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 MRPS36P5-201ENST00000551909 298 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AL359212.1-201ENST00000556608 614 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC009163.5-201ENST00000575421 637 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC005498.1-201ENST00000592125 465 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 RPL12P50-201ENST00000603116 116 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AL358072.1-201ENST00000604156 575 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC007619.2-201ENST00000605743 379 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 MIR7106-201ENST00000612419 65 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC007998.5-201ENST00000622938 237 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC091931.1-201ENST00000623488 728 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
DDX28Q9NUL7 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.65□□□□□ -1.99
DDX28Q9NUL7 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RNU6-960P-201ENST00000364056 120 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 SET-203ENST00000372688 801 ntTSL 2 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RNU6-817P-201ENST00000391083 104 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RNU6-193P-201ENST00000410977 107 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 NDUFS5P4-201ENST00000412983 318 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 CYCSP46-201ENST00000423569 204 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RNU6-953P-201ENST00000459154 107 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC090525.1-201ENST00000479116 478 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms