Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RPS26P8-201ENST00000393490 348 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 TMEM167AP1-201ENST00000423409 219 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 RPL23AP46-201ENST00000438548 490 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 RPS23P3-201ENST00000470993 430 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AC084198.1-201ENST00000477747 402 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 RPL21P13-201ENST00000488305 481 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 RNU6-1282P-201ENST00000516735 96 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 RNA5SP165-201ENST00000517142 115 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AL670379.10-201ENST00000604330 253 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AL670379.9-201ENST00000605428 253 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 RNU6-85P-201ENST00000605989 107 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AC099506.2-201ENST00000623074 221 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AL359757.2-201ENST00000624309 274 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AC048347.1-201ENST00000624621 427 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 MTND4LP32-201ENST00000636111 270 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AL049641.1-201ENST00000441055 1948 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 AC022336.2-201ENST00000568966 2538 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
TRIM39Q9HCM9 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
TRIM39Q9HCM9 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
TRIM39Q9HCM9 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 MIR3074-201ENST00000384885 81 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 ATG3P1-201ENST00000419507 911 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 HMGB1P9-201ENST00000429856 646 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 RPS6P12-201ENST00000432491 726 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 AL512844.2-201ENST00000433990 593 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 AL356535.1-201ENST00000440335 398 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 NDUFB1P2-201ENST00000449477 176 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 RNA5SP246-201ENST00000458909 119 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 AL645944.1-201ENST00000603857 493 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 MIR492-201ENST00000638676 116 ntBASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM39Q9HCM9 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 RNU6-1106P-201ENST00000390845 107 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AL590004.1-201ENST00000405321 300 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 RNU2-3P-201ENST00000410144 191 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 RNU4-14P-201ENST00000410858 122 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 RNU6-954P-201ENST00000411355 107 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 SKA2P1-201ENST00000425592 390 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 SNRPEP9-201ENST00000436794 238 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 Y_RNA.653-201ENST00000459091 95 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC011005.2-201ENST00000487324 359 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 RNU6-1016P-201ENST00000516689 94 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AP005597.4-201ENST00000526762 229 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC093249.1-201ENST00000567049 203 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 RN7SL600P-201ENST00000581811 299 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 CYP2C61P-201ENST00000604072 290 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC004805.2-201ENST00000605382 482 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC080078.3-201ENST00000605407 463 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 MIR6128-201ENST00000615528 109 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 PISRT1.1-201ENST00000616930 107 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 AC118273.1-201ENST00000525324 3006 ntBASIC4.14□□□□□ -1.75
TRIM39Q9HCM9 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 SNORD116-29-201ENST00000384516 83 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 MIR34A-201ENST00000385130 110 ntBASIC4.13□□□□□ -1.75
TRIM39Q9HCM9 MIR325-201ENST00000385260 98 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms