Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
USP44Q9H0E7 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USP44Q9H0E7 AC005183.1-201ENST00000603687 1979 ntBASIC3.47□□□□□ -1.85
USP44Q9H0E7 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP44Q9H0E7 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.47□□□□□ -1.85
USP44Q9H0E7 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
USP44Q9H0E7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
USP44Q9H0E7 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
USP44Q9H0E7 RNU5E-1-201ENST00000362477 120 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 SNORD56.2-201ENST00000363242 71 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 RNY4P34-201ENST00000364779 95 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 RNU6-7-201ENST00000364784 107 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 RNU6-8-201ENST00000365467 107 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 RNU6-817P-201ENST00000391083 104 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC127391.1-201ENST00000411737 98 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 MTCO3P41-201ENST00000414801 328 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 Z85995.1-201ENST00000415547 335 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 C1DP2-201ENST00000418167 426 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC092798.1-201ENST00000458542 409 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 RNU6-953P-201ENST00000459154 107 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 RN7SKP298-201ENST00000515950 94 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 RNA5SP356-201ENST00000515972 94 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 RNU6-1092P-201ENST00000516955 87 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC093331.1-201ENST00000521474 169 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AL163153.1-201ENST00000554223 283 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 ZNF861P-201ENST00000588126 639 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AP000860.1-201ENST00000605250 559 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC098614.4-201ENST00000607601 462 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC005046.1-201ENST00000608515 625 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC104073.3-201ENST00000610942 955 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AL133173.2-201ENST00000614270 90 ntBASIC3.46□□□□□ -1.86
USP44Q9H0E7 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.46□□□□□ -1.86
USP44Q9H0E7 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 RPL9P7-201ENST00000330965 580 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 SNORA20.2-201ENST00000383922 131 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 MIR634-201ENST00000385208 97 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 NDUFS5P1-201ENST00000405668 289 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 RNU2-16P-201ENST00000410712 136 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 RNA5SP21-201ENST00000410917 96 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 HMGB3P12-201ENST00000438745 556 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 MTCO2P4-201ENST00000517968 247 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
USP44Q9H0E7 CASP1P1-201ENST00000526345 212 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 AMZ2P1-203ENST00000565833 850 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 MIR3913-1-201ENST00000577744 102 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC104763.2-201ENST00000604179 382 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.45□□□□□ -1.86
USP44Q9H0E7 AL139286.2-201ENST00000606838 396 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AP002360.4-201ENST00000606980 481 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC107294.3-201ENST00000609211 526 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC107294.1-201ENST00000609524 467 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AL161734.1-201ENST00000609720 557 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC099778.2-201ENST00000610904 211 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 Z99129.1-201ENST00000612510 255 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 AC110994.2-201ENST00000635481 492 ntBASIC3.45□□□□□ -1.86
USP44Q9H0E7 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
USP44Q9H0E7 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP44Q9H0E7 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
USP44Q9H0E7 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
USP44Q9H0E7 AC233263.6-201ENST00000631132 1963 ntBASIC3.44□□□□□ -1.86
USP44Q9H0E7 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
USP44Q9H0E7 Y_RNA.510-201ENST00000384511 114 ntBASIC3.44□□□□□ -1.86
USP44Q9H0E7 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.44□□□□□ -1.86
USP44Q9H0E7 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.44□□□□□ -1.86
USP44Q9H0E7 MTND3P17-201ENST00000416968 344 ntBASIC3.44□□□□□ -1.86
USP44Q9H0E7 MED13P1-201ENST00000428342 171 ntBASIC3.44□□□□□ -1.86
USP44Q9H0E7 AL512844.2-201ENST00000433990 593 ntBASIC3.44□□□□□ -1.86
USP44Q9H0E7 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.44□□□□□ -1.86
USP44Q9H0E7 AC079781.2-201ENST00000446424 169 ntBASIC3.44□□□□□ -1.86
USP44Q9H0E7 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.44□□□□□ -1.86
USP44Q9H0E7 KLF3P2-201ENST00000465138 268 ntBASIC3.44□□□□□ -1.86
USP44Q9H0E7 AC004924.1-201ENST00000480160 781 ntBASIC3.44□□□□□ -1.86
USP44Q9H0E7 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.44□□□□□ -1.86
USP44Q9H0E7 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.44□□□□□ -1.86
USP44Q9H0E7 RNU6-405P-201ENST00000516637 110 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms