Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MTND4LP3-201ENST00000468320 276 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AC108210.2-201ENST00000503681 201 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 MTCO3P28-201ENST00000513351 515 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 RNU2-10P-201ENST00000516375 211 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 HPRT1P3-201ENST00000539521 576 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AC005951.2-201ENST00000576282 495 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AC009090.3-201ENST00000616553 565 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 SNORA50A-202ENST00000629536 136 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ZNF541Q9H0D2 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.21□□□□□ -1.9
ZNF541Q9H0D2 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 SNORD62.1-201ENST00000362541 86 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 RNU1-35P-201ENST00000362782 153 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 Y_RNA.553-201ENST00000384670 102 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 MIR518C-201ENST00000384822 101 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 RN7SKP58-201ENST00000411010 305 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 MTCO2P34-201ENST00000421994 607 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 OR2AS1P-201ENST00000427827 319 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC073614.1-201ENST00000438690 650 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC104058.1-201ENST00000448028 297 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 RN7SL75P-201ENST00000461926 281 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 RPL30P14-201ENST00000482744 348 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 RNA5SP282-201ENST00000516355 108 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 SCARNA15.2-201ENST00000516409 127 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC245166.1-201ENST00000521012 253 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 MIR4648-201ENST00000580107 72 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 DUXAP4-201ENST00000603046 613 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AP000860.1-201ENST00000605250 559 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC009570.1-201ENST00000609599 745 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC131902.3-201ENST00000611767 581 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC010678.1-201ENST00000614118 713 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 uc_338.12-201ENST00000616344 181 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 MIR6076-201ENST00000617521 113 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AL603839.4-201ENST00000624658 1005 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 TEX21P-201ENST00000447107 1476 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC110774.1-201ENST00000623567 2018 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 AC093831.2-201ENST00000624393 3427 ntBASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.2□□□□□ -1.9
ZNF541Q9H0D2 RPL21P3-201ENST00000395517 478 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RPS4XP3-201ENST00000398541 413 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 HMGB1P27-201ENST00000431429 603 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 MTND6P13-201ENST00000443510 523 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 USP9YP29-201ENST00000445112 563 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL590639.1-201ENST00000456484 337 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 SNORD42A-201ENST00000459584 64 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RPL21P41-201ENST00000459863 264 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC146507.2-201ENST00000460608 476 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 KCTD9P5-201ENST00000504141 1170 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RNA5SP380-201ENST00000517190 98 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 DEFB122-202ENST00000569013 197 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC008498.1-201ENST00000613012 531 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC092140.2-201ENST00000618027 521 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 TPTE2P4-201ENST00000258589 1605 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AC006020.1-201ENST00000420179 1854 ntBASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.19□□□□□ -1.9
ZNF541Q9H0D2 RNU6-1284P-201ENST00000363701 100 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms