Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MTCYBP40-201ENST00000509390 1135 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 PPBPP1-201ENST00000510807 373 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RNU6-1038P-201ENST00000516516 104 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RNU6-566P-201ENST00000516790 107 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RN7SKP295-201ENST00000517264 153 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 IMMP1LP2-201ENST00000552954 492 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AC024619.4-201ENST00000580924 316 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AC093227.2-201ENST00000589357 285 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 NUTF2P8-201ENST00000604593 363 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AL592436.1-201ENST00000605135 558 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AC022893.3-201ENST00000607665 437 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AC092807.2-201ENST00000609367 243 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AC034102.8-201ENST00000615146 484 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AL021997.2-201ENST00000615674 271 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AC007546.2-201ENST00000623996 360 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 MTND5P19-201ENST00000424872 1794 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 SNORA62.1-201ENST00000364287 154 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 RNA5SP151-201ENST00000365632 117 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 RNU6-741P-201ENST00000383889 107 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AL022722.2-201ENST00000402519 180 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 RPL37P10-201ENST00000412884 288 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AL159169.1-201ENST00000421119 127 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 SKA2P1-201ENST00000425592 390 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 FABP5P14-201ENST00000437273 393 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 RNU7-182P-201ENST00000459009 62 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 MTATP8P1-201ENST00000467115 207 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 RPL7P43-201ENST00000478876 753 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 HMGB1P30-201ENST00000492455 606 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC108022.1-201ENST00000493466 478 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC108078.2-201ENST00000510750 236 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC008958.1-201ENST00000511047 682 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 RNA5SP49-201ENST00000516450 115 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 RNU6-677P-201ENST00000516914 101 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC025884.1-201ENST00000556034 378 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 MIR3160-1-201ENST00000577972 85 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC098657.3-201ENST00000620434 263 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC025034.2-201ENST00000623264 286 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AC121333.1-201ENST00000567488 2709 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 AF127577.6-201ENST00000623352 2191 ntBASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
CLIP3Q96DZ5 MTND5P10-201ENST00000603719 1809 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 MIR423-201ENST00000362201 94 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RNA5SP307-201ENST00000362863 116 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 Y_RNA.158-201ENST00000363651 101 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RNU6-61P-201ENST00000365528 109 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AC117470.1-201ENST00000381974 330 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RNU6-1029P-201ENST00000384109 107 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 SNORA57.1-201ENST00000391227 145 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 MIR1302-3-201ENST00000408128 138 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RNU2-29P-201ENST00000410423 189 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RNU6-387P-201ENST00000411331 105 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 ARL5AP1-201ENST00000418991 388 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 SNORA71B-202ENST00000439232 272 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AL035666.1-201ENST00000446195 348 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 CEACAMP4-201ENST00000457676 421 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RPL37P6-201ENST00000460682 294 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 SNRPGP3-201ENST00000469405 227 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RPL30P5-201ENST00000494923 336 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RN7SKP24-201ENST00000515888 284 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RNA5SP519-201ENST00000516480 119 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 RNU6-273P-201ENST00000516937 96 ntBASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP3Q96DZ5 AL360157.1-201ENST00000565962 87 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms