Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC146507.2-201ENST00000460608 476 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC109925.1-201ENST00000478069 331 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 RPL21P13-201ENST00000488305 481 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.32□□□□□ -1.88
SKA1Q96BD8 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC022447.1-201ENST00000515358 464 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 Vault.3-201ENST00000516676 95 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC060788.1-201ENST00000521318 469 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC021739.1-201ENST00000559631 174 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 AC103810.1-201ENST00000579873 453 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 AL590229.1-201ENST00000603497 542 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 AL162713.1-201ENST00000604480 262 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 AL157817.1-201ENST00000614264 790 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 AL359547.2-201ENST00000615810 418 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 PISRT1-201ENST00000626175 531 ntBASIC3.32□□□□□ -1.88
SKA1Q96BD8 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SKA1Q96BD8 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.32□□□□□ -1.88
SKA1Q96BD8 TEX21P-201ENST00000447107 1476 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
SKA1Q96BD8 RN7SKP226-201ENST00000364912 300 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 RNU6-1180P-201ENST00000364935 107 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 Y_RNA.534-201ENST00000384599 112 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 RNY3P9-201ENST00000384727 106 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 UBA52P6-201ENST00000399822 382 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 RPL5P18-201ENST00000406671 891 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 RNU2-39P-201ENST00000410604 198 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AL109913.1-201ENST00000421173 514 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 RN7SL504P-201ENST00000494496 287 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SKA1Q96BD8 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC098591.2-201ENST00000510152 315 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 Y_RNA.689-201ENST00000516589 107 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 SNORD19.2-201ENST00000516978 73 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 RNU6-1315P-201ENST00000517187 99 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 AP002453.2-201ENST00000533503 320 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC137800.2-201ENST00000574375 120 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC005771.1-201ENST00000585581 349 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 NRBF2P1-201ENST00000587407 859 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 Z99497.2-201ENST00000603634 310 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 AC131902.3-201ENST00000611767 581 ntBASIC3.31□□□□□ -1.88
SKA1Q96BD8 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA1Q96BD8 FARSBP1-201ENST00000435808 1778 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AL355596.1-201ENST00000565399 3996 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC008264.2-201ENST00000610193 3731 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC093831.2-201ENST00000624393 3427 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC009487.2-201ENST00000420969 6821 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SKA1Q96BD8 U8.3-201ENST00000363321 132 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 RNU6-641P-201ENST00000384006 107 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 RNU6-39P-201ENST00000384344 107 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 MIR558-201ENST00000384920 94 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC007899.1-201ENST00000412776 775 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 USP9YP6-201ENST00000413550 854 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 SETP8-201ENST00000435341 628 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 SNORA59A-201ENST00000459326 152 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 TRBV1-201ENST00000476502 284 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 RPS3AP14-201ENST00000483907 780 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC109927.2-201ENST00000506416 303 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC117522.1-201ENST00000509821 380 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 RNA5SP217-201ENST00000515959 91 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 SCARNA11.3-201ENST00000517276 130 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 COX6CP5-201ENST00000527162 228 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC106782.4-201ENST00000568264 210 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 MIR4782-201ENST00000577987 79 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AL451007.1-201ENST00000595491 289 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 Z99129.2-201ENST00000619967 314 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 AC110994.2-201ENST00000635481 492 ntBASIC3.3□□□□□ -1.88
SKA1Q96BD8 MIR7515-201ENST00000637837 67 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms