Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SNORD115-3-201ENST00000363100 82 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 RNU6-733P-201ENST00000410759 104 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 KRTAP19-11P-201ENST00000439851 104 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AL353691.1-201ENST00000451332 387 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AC087343.1-201ENST00000477341 475 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AC025465.3-201ENST00000510570 311 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AC125611.1-201ENST00000549563 229 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 FAM71BP1-201ENST00000604431 523 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AL033523.1-201ENST00000605153 153 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AC007998.5-201ENST00000622938 237 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 AC034229.5-201ENST00000624258 185 ntBASIC0.45□□□□□ -2.34
LINC00643Q86TS7 ANKRD20A9P-201ENST00000457997 2978 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 RNU6-217P-201ENST00000384164 104 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 HMGB1P17-201ENST00000403495 628 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 USP9YP33-201ENST00000412220 421 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 SNRPEP10-201ENST00000420249 274 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 PGBD4P5-201ENST00000445958 426 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 RPS27P1-201ENST00000450552 247 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC104073.1-201ENST00000451988 151 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 snoU109.4-201ENST00000458953 143 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC103987.1-201ENST00000473394 348 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC004924.1-201ENST00000480160 781 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC069306.1-201ENST00000507006 843 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 RNU5A-7P-201ENST00000515979 116 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC024224.1-201ENST00000538284 609 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC015688.2-201ENST00000584523 262 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC007179.3-201ENST00000604976 235 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 MIR378J-201ENST00000611988 109 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AL359314.1-201ENST00000616913 261 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 uc_338.17-201ENST00000619633 179 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC068831.8-201ENST00000620171 435 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 PCNP-208ENST00000627393 136 ntTSL 2 BASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AL359854.1-201ENST00000614203 1594 ntBASIC0.44□□□□□ -2.34
LINC00643Q86TS7 AL136360.1-201ENST00000503377 1900 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 RNU6-968P-201ENST00000384076 107 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 MIR561-201ENST00000385216 97 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 SNORA67.5-201ENST00000391036 107 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AL161651.1-201ENST00000440882 223 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 PIGFP3-201ENST00000441918 722 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AC092757.1-201ENST00000467293 467 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 LARP1BP2-201ENST00000486594 519 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AC018868.1-201ENST00000491307 315 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 SAP18P1-201ENST00000512058 390 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AC136628.3-201ENST00000521868 290 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 MAL2-206ENST00000522187 547 ntTSL 4 BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 NDUFA5P6-201ENST00000542110 379 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AC023158.1-201ENST00000561632 1025 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 MIR5195-201ENST00000583555 115 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 MTCO3P22-201ENST00000603219 784 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 SNRPGP17-201ENST00000603780 214 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 AC091895.1-201ENST00000624494 256 ntBASIC0.43□□□□□ -2.34
LINC00643Q86TS7 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
LINC00643Q86TS7 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 5S_rRNA.1-201ENST00000364415 116 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 MIR506-201ENST00000384998 124 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 MIR29C-201ENST00000385231 88 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 MIR92A1-201ENST00000385233 78 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 RNU11-3P-201ENST00000391111 133 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AC091390.1-201ENST00000433904 331 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AL606490.8-201ENST00000441624 319 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AC009220.1-201ENST00000451614 275 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 VPS26AP1-201ENST00000483197 979 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 CAB39P1-201ENST00000502277 460 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC0.42□□□□□ -2.34
LINC00643Q86TS7 SNORD116-28-201ENST00000516123 91 ntBASIC0.42□□□□□ -2.34
LINC00643Q86TS7 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms