Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.25□□□□□ -1.89
USP43Q70EL4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.25□□□□□ -1.89
USP43Q70EL4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.25□□□□□ -1.89
USP43Q70EL4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.25□□□□□ -1.89
USP43Q70EL4 RNU7-152P-201ENST00000458982 64 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC091179.1-201ENST00000461606 579 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 RPL37P6-202ENST00000464216 403 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.25□□□□□ -1.89
USP43Q70EL4 AC010587.1-201ENST00000505809 469 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.25□□□□□ -1.89
USP43Q70EL4 RNU4-49P-201ENST00000516080 140 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 RNU2-27P-201ENST00000516185 142 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 RNA5SP164-201ENST00000516533 110 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 SNORA64.4-201ENST00000516632 81 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC107934.1-201ENST00000522215 217 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC022861.1-201ENST00000522981 663 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.25□□□□□ -1.89
USP43Q70EL4 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.25□□□□□ -1.89
USP43Q70EL4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.25□□□□□ -1.89
USP43Q70EL4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.25□□□□□ -1.89
USP43Q70EL4 FRG2DP-202ENST00000566967 323 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC010653.1-201ENST00000571108 881 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.25□□□□□ -1.89
USP43Q70EL4 AC010525.2-201ENST00000590920 195 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.25□□□□□ -1.89
USP43Q70EL4 AC007938.3-201ENST00000604965 623 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 SNORA62.6-201ENST00000606322 83 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC084781.2-201ENST00000615568 161 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP43Q70EL4 uc_338.22-201ENST00000622722 187 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 AC091925.1-201ENST00000623204 462 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.25□□□□□ -1.89
USP43Q70EL4 MTND4LP32-201ENST00000636111 270 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP43Q70EL4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.25□□□□□ -1.89
USP43Q70EL4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP43Q70EL4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.25□□□□□ -1.89
USP43Q70EL4 ELL2P4-201ENST00000446870 1376 ntBASIC3.25□□□□□ -1.89
USP43Q70EL4 MTCO1P12-201ENST00000414273 1543 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP43Q70EL4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
USP43Q70EL4 AP004289.2-201ENST00000444413 1457 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP43Q70EL4 RNU6-853P-201ENST00000364306 107 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 RNA5SP97-201ENST00000365006 84 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 RNU6-108P-201ENST00000365558 107 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 RNU6-456P-201ENST00000384493 107 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 MIR483-201ENST00000385070 76 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
USP43Q70EL4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
USP43Q70EL4 MIR548I3-201ENST00000408378 149 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 MIR548I1-201ENST00000408810 149 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 RNU4-14P-201ENST00000410858 122 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.24□□□□□ -1.89
USP43Q70EL4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.24□□□□□ -1.89
USP43Q70EL4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.24□□□□□ -1.89
USP43Q70EL4 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.24□□□□□ -1.89
USP43Q70EL4 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.24□□□□□ -1.89
USP43Q70EL4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.24□□□□□ -1.89
USP43Q70EL4 RPL32P28-201ENST00000443577 397 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 RPS3AP12-201ENST00000443616 753 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 RPS26P56-201ENST00000444468 240 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 TRBV26-201ENST00000456572 344 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 HMGB1P30-201ENST00000492455 606 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 RN7SL323P-201ENST00000494712 295 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 HMGB3P15-201ENST00000507326 574 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 AC104136.1-201ENST00000512969 394 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 RNU6-1314P-201ENST00000517139 104 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 AC090572.1-201ENST00000519251 160 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 BTF3P12-201ENST00000519620 469 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 AC022634.1-201ENST00000520765 532 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.24□□□□□ -1.89
USP43Q70EL4 AC022616.3-201ENST00000523940 148 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 AP003122.3-201ENST00000526316 255 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.24□□□□□ -1.89
USP43Q70EL4 AL163153.1-201ENST00000554223 283 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.24□□□□□ -1.89
USP43Q70EL4 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 DPPA3P3-201ENST00000603842 430 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 AP000654.2-201ENST00000605633 586 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP43Q70EL4 AC012314.7-201ENST00000619693 93 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 PLCE1P1-201ENST00000622094 305 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.24□□□□□ -1.89
USP43Q70EL4 MTND5P7-201ENST00000413558 1798 ntBASIC3.24□□□□□ -1.89
USP43Q70EL4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
USP43Q70EL4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP43Q70EL4 Y_RNA.28-201ENST00000362554 111 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 RNA5SP124-201ENST00000362739 110 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP43Q70EL4 SNORA20.2-201ENST00000383922 131 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 Y_RNA.445-201ENST00000384168 102 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 RNU6-831P-201ENST00000384548 107 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 RNU6-1222P-201ENST00000384615 107 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 MIR34B-201ENST00000385076 84 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 RNU6-308P-201ENST00000390957 107 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP43Q70EL4 RNU2-3P-201ENST00000410144 191 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 RNU4-61P-201ENST00000411243 107 ntBASIC3.23□□□□□ -1.89
USP43Q70EL4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms