Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AL159972.1-201ENST00000625150 448 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 PNRC2P1-201ENST00000423940 420 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 VN1R42P-201ENST00000424651 344 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC007000.2-201ENST00000442564 487 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 MTND3P4-201ENST00000453537 303 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 BZW1P2-201ENST00000473537 826 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC008837.2-201ENST00000513076 418 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 LSM6P2-201ENST00000552208 177 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 NIFKP8-201ENST00000560500 874 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC011260.1-201ENST00000578420 472 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC090616.3-201ENST00000582184 217 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC005332.10-201ENST00000612725 619 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC091925.2-201ENST00000625059 256 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 MTCO1P4-201ENST00000520516 1409 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 CCT4P2-201ENST00000233836 1548 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 SNORA38-201ENST00000363946 132 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 ERHP2-201ENST00000402323 299 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 SRIP3-201ENST00000413200 219 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 FCF1P2-201ENST00000415284 583 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 RPS6P15-201ENST00000431996 751 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AC090774.1-201ENST00000435925 246 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AC022447.1-201ENST00000515358 464 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AP005660.1-201ENST00000522972 293 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 MIR4666A-201ENST00000580160 79 ntBASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.66□□□□□ -2.14
CCDC88AQ3V6T2 SNORD115-48-201ENST00000364764 76 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 RNU1-52P-201ENST00000384190 164 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 MTND2P5-201ENST00000432656 1006 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AL360221.1-201ENST00000445989 335 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AP004607.1-201ENST00000524456 203 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 SETP7-201ENST00000552169 453 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AC133794.1-201ENST00000602731 914 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AC002487.1-201ENST00000604565 994 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AL355802.4-201ENST00000607635 548 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 FTX_3.1-201ENST00000610451 147 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 MIR6078-201ENST00000611069 100 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 AC079395.3-201ENST00000615161 484 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.65□□□□□ -2.14
CCDC88AQ3V6T2 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 AL049641.1-201ENST00000441055 1948 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-234P-201ENST00000365229 104 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 RPL31P63-201ENST00000422565 375 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 AC007560.1-201ENST00000426912 237 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 CALM1P1-201ENST00000442082 433 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 AC104685.1-201ENST00000502445 371 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 RNA5SP471-201ENST00000516971 106 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 AP003033.1-201ENST00000527244 415 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 MIR4285-201ENST00000581001 85 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 AC091946.2-201ENST00000606105 291 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 MIR98-201ENST00000606724 119 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 AC006213.5-201ENST00000619673 288 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 UCA1.1-201ENST00000620952 75 ntBASIC1.65□□□□□ -2.15
CCDC88AQ3V6T2 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-461P-201ENST00000364195 107 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 TXNP7-201ENST00000406296 293 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 MIR1290-201ENST00000408735 78 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AC234064.1-201ENST00000436312 247 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 ARF4P4-201ENST00000439608 520 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 MTND4LP16-201ENST00000440828 295 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 RNU6-775P-201ENST00000459318 96 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AC107626.1-201ENST00000471084 183 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 CBX3P3-201ENST00000508108 532 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AC114786.4-201ENST00000508771 728 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AC114797.1-201ENST00000514003 728 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 SNORA48.9-201ENST00000516419 162 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AP005435.4-201ENST00000529514 284 ntBASIC1.64□□□□□ -2.15
CCDC88AQ3V6T2 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms