Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A3Q01955 RNU4-35P-201ENST00000362588 141 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 Y_RNA.252-201ENST00000364556 101 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RNU6-637P-201ENST00000384050 107 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 Y_RNA.476-201ENST00000384347 108 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 MT-TR-201ENST00000387439 65 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RNA5SP219-201ENST00000390940 113 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 HMGB3P2-201ENST00000411913 584 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AL160275.2-201ENST00000412010 394 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RPL21P24-201ENST00000413752 448 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AC096644.2-201ENST00000429278 159 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RPL21P11-201ENST00000461458 483 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 MTND4LP22-201ENST00000508209 276 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A3Q01955 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 SETP7-201ENST00000552169 453 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 MYL12BP1-201ENST00000569826 507 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
COL4A3Q01955 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 ATP1B3P1-201ENST00000605365 821 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A3Q01955 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A3Q01955 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A3Q01955 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A3Q01955 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A3Q01955 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A3Q01955 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A3Q01955 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A3Q01955 AL133383.2-201ENST00000622958 2336 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.8□□□□□ -1.8
COL4A3Q01955 RNU6-1115P-201ENST00000362490 106 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 RNU6-562P-201ENST00000362731 107 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 Y_RNA.463-201ENST00000384271 102 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 SNORD51-201ENST00000384320 80 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 SNORD70.1-201ENST00000391007 85 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 RNA5SP39-201ENST00000411245 120 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 AC093106.2-201ENST00000428212 385 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 AC005326.1-201ENST00000429197 123 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 RPL23AP69-201ENST00000431134 458 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 SNORA71B-202ENST00000439232 272 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.8□□□□□ -1.8
COL4A3Q01955 RPS26P15-201ENST00000488067 348 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.8□□□□□ -1.8
COL4A3Q01955 AC016065.2-201ENST00000514530 444 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 Y_RNA.661-201ENST00000516003 99 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 Vault.1-201ENST00000516474 102 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 AC100870.1-201ENST00000522035 505 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.8□□□□□ -1.8
COL4A3Q01955 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A3Q01955 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.8□□□□□ -1.8
COL4A3Q01955 BNIP3P16-201ENST00000589779 534 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.8□□□□□ -1.8
COL4A3Q01955 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A3Q01955 AL138889.2-201ENST00000603883 242 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 U2.17-201ENST00000611454 95 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 MIR8057-201ENST00000620957 69 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.8□□□□□ -1.8
COL4A3Q01955 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A3Q01955 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.8□□□□□ -1.8
COL4A3Q01955 KPNA2P1-201ENST00000458289 1591 ntBASIC3.8□□□□□ -1.8
COL4A3Q01955 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.8□□□□□ -1.8
COL4A3Q01955 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A3Q01955 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A3Q01955 Z95331.1-201ENST00000623075 23112 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 AC093535.2-201ENST00000624769 2326 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A3Q01955 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A3Q01955 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC3.79□□□□□ -1.8
COL4A3Q01955 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
COL4A3Q01955 Y_RNA.364-201ENST00000365532 101 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 AL109755.1-201ENST00000401791 649 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 RNU6-847P-201ENST00000411115 108 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A3Q01955 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A3Q01955 RPS15AP40-201ENST00000419621 391 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 AC087650.1-201ENST00000431445 468 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 EIF4A1P11-201ENST00000451239 222 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 RPL12P25-201ENST00000455592 494 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A3Q01955 TRBV1-201ENST00000476502 284 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A3Q01955 MRPS35P2-201ENST00000508242 191 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 MTCO3P44-201ENST00000510977 541 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 RNU6-470P-201ENST00000515954 104 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.79□□□□□ -1.8
COL4A3Q01955 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A3Q01955 RANP3-201ENST00000530970 276 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 CR383656.7-201ENST00000548164 174 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms