Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 FO393413.1-201ENST00000402892 195 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AL161449.1-201ENST00000414531 1199 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 AL135752.1-201ENST00000479477 471 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 SCARNA15.2-201ENST00000516409 127 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 SNORD19.2-201ENST00000516978 73 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 RN7SKP40-201ENST00000517211 242 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.16□□□□□ -2.06
BRCA1P38398 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC007151.1-201ENST00000572774 483 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC098848.2-201ENST00000588023 330 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.16□□□□□ -2.06
BRCA1P38398 MIR8081-201ENST00000611533 95 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 MIR6779-201ENST00000617283 64 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.16□□□□□ -2.06
BRCA1P38398 UCA1.1-201ENST00000620952 75 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AP000676.4-201ENST00000624659 623 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.07
BRCA1P38398 MIR514A1-201ENST00000385133 98 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 RNU2-25P-201ENST00000411041 191 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 AC027124.2-201ENST00000428249 105 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.15□□□□□ -2.07
BRCA1P38398 RNU1-123P-201ENST00000458950 160 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 RPL30P5-201ENST00000494923 336 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 AC026801.1-201ENST00000497178 464 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
BRCA1P38398 AC114786.4-201ENST00000508771 728 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 AC114797.1-201ENST00000514003 728 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 SNORA31.11-201ENST00000516528 139 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.15□□□□□ -2.07
BRCA1P38398 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 MIR3609-201ENST00000582661 80 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 AL645939.4-201ENST00000604495 135 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 AC112220.2-201ENST00000605513 533 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 AP000720.1-201ENST00000625091 483 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
BRCA1P38398 AC012321.1-201ENST00000561622 1588 ntBASIC2.15□□□□□ -2.07
BRCA1P38398 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.07
BRCA1P38398 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.15□□□□□ -2.07
BRCA1P38398 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.15□□□□□ -2.07
BRCA1P38398 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.14□□□□□ -2.07
BRCA1P38398 AC135776.4-201ENST00000624300 1904 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 CR848007.1-201ENST00000442354 1699 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AL391987.6-201ENST00000305671 199 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 RNU4-13P-201ENST00000364019 141 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 RNA5SP160-201ENST00000364866 120 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 RNU6-1207P-201ENST00000384343 107 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 RNA5SP492-201ENST00000411330 114 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 USP9YP26-201ENST00000421008 661 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC2.14□□□□□ -2.07
BRCA1P38398 GTF2IP7-202ENST00000436677 309 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC007327.1-201ENST00000447461 264 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC090515.1-201ENST00000465295 476 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC2.14□□□□□ -2.07
BRCA1P38398 TMEM251P1-201ENST00000503717 318 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 RNU6-583P-201ENST00000516012 92 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.14□□□□□ -2.07
BRCA1P38398 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.14□□□□□ -2.07
BRCA1P38398 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.14□□□□□ -2.07
BRCA1P38398 AC068135.2-201ENST00000569293 1028 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 RMST_6.1-201ENST00000611980 203 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC004852.3-201ENST00000614131 326 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AL138960.2-201ENST00000625145 535 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC013437.2-201ENST00000639587 677 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
BRCA1P38398 MTND4P23-201ENST00000447723 1363 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC009902.3-201ENST00000606235 2172 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
BRCA1P38398 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
BRCA1P38398 RNU6-278P-201ENST00000390945 109 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.14□□□□□ -2.07
BRCA1P38398 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.14□□□□□ -2.07
BRCA1P38398 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.14□□□□□ -2.07
BRCA1P38398 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.14□□□□□ -2.07
BRCA1P38398 AL714022.1-201ENST00000439897 151 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 Z82210.1-201ENST00000440037 231 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 MTND1P31-201ENST00000449206 961 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC116337.2-201ENST00000477662 156 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC016550.1-201ENST00000505348 785 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.14□□□□□ -2.07
BRCA1P38398 AC024589.1-201ENST00000512207 263 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.14□□□□□ -2.07
BRCA1P38398 MTND3P13-201ENST00000574391 343 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 U73023.1-201ENST00000603134 700 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AC090132.2-201ENST00000615881 347 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 AL158163.2-201ENST00000619110 700 ntBASIC2.14□□□□□ -2.07
BRCA1P38398 MTND4P27-201ENST00000450813 1354 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
BRCA1P38398 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
BRCA1P38398 AC233981.2-201ENST00000611524 1614 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 Y_RNA.112-201ENST00000363250 102 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 SNORA68.1-201ENST00000364537 132 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 MIR888-201ENST00000401186 77 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms