Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AL365184.2-201ENST00000431139 435 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.69□□□□□ -1.98
PTPN4P29074 AL512286.1-201ENST00000439244 400 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 AC005094.1-201ENST00000440420 368 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.69□□□□□ -1.98
PTPN4P29074 RPL37P4-201ENST00000448908 268 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.69□□□□□ -1.98
PTPN4P29074 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.69□□□□□ -1.98
PTPN4P29074 LARP1BP2-201ENST00000486594 519 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 RN7SKP258-201ENST00000517151 304 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.69□□□□□ -1.98
PTPN4P29074 AC123904.3-201ENST00000547218 814 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 AC091489.2-201ENST00000566263 604 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 ZNF861P-201ENST00000588126 639 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 KC877982.1-201ENST00000602313 470 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 AC025811.1-201ENST00000604312 472 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.69□□□□□ -1.98
PTPN4P29074 AC008498.1-201ENST00000613012 531 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.69□□□□□ -1.98
PTPN4P29074 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.69□□□□□ -1.98
PTPN4P29074 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.69□□□□□ -1.98
PTPN4P29074 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.69□□□□□ -1.98
PTPN4P29074 MTND5P29-201ENST00000458676 1807 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.68□□□□□ -1.98
PTPN4P29074 RNU5F-6P-201ENST00000362979 116 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 RNU6-140P-201ENST00000384566 108 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AL359634.1-202ENST00000404721 284 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 Z99497.1-201ENST00000421282 135 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.68□□□□□ -1.98
PTPN4P29074 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.68□□□□□ -1.98
PTPN4P29074 WASF1P1-201ENST00000447560 1131 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AC108938.1-201ENST00000451204 136 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AL109933.2-201ENST00000452651 260 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.68□□□□□ -1.98
PTPN4P29074 MTCO1P42-201ENST00000457379 726 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AC010631.1-201ENST00000474150 156 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 RN7SL432P-201ENST00000484057 298 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.68□□□□□ -1.98
PTPN4P29074 RNU6-201P-201ENST00000517100 61 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AC022634.1-201ENST00000520765 532 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.68□□□□□ -1.98
PTPN4P29074 AC007834.2-201ENST00000536310 343 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 OSBPL9P5-201ENST00000542581 171 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.68□□□□□ -1.98
PTPN4P29074 MIR3915-201ENST00000578518 97 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 AC245517.5-201ENST00000611529 162 ntBASIC2.68□□□□□ -1.98
PTPN4P29074 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
PTPN4P29074 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.68□□□□□ -1.98
PTPN4P29074 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
PTPN4P29074 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.68□□□□□ -1.98
PTPN4P29074 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
PTPN4P29074 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
PTPN4P29074 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
PTPN4P29074 AC004944.1-201ENST00000517807 3059 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AL445523.1-201ENST00000451184 1362 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
PTPN4P29074 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
PTPN4P29074 FTLP6-201ENST00000355274 422 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 RNU6-301P-201ENST00000384277 107 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
PTPN4P29074 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
PTPN4P29074 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.67□□□□□ -1.98
PTPN4P29074 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.67□□□□□ -1.98
PTPN4P29074 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.67□□□□□ -1.98
PTPN4P29074 HMGB1P27-201ENST00000431429 603 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 EPS15P1-201ENST00000448836 336 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.67□□□□□ -1.98
PTPN4P29074 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.67□□□□□ -1.98
PTPN4P29074 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.67□□□□□ -1.98
PTPN4P29074 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
PTPN4P29074 RN7SL429P-201ENST00000479090 223 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 RN7SL489P-201ENST00000486185 223 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AC109486.1-201ENST00000486833 374 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 RN7SL327P-201ENST00000488659 223 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 SRIP1-201ENST00000489235 288 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AC026801.1-201ENST00000497178 464 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AIG1P1-201ENST00000503376 148 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.67□□□□□ -1.98
PTPN4P29074 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
PTPN4P29074 MRPS36P2-201ENST00000512569 299 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.67□□□□□ -1.98
PTPN4P29074 RNA5SP290-201ENST00000517133 127 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AC106038.2-201ENST00000520706 568 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.67□□□□□ -1.98
PTPN4P29074 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.67□□□□□ -1.98
PTPN4P29074 GLYCAM1-201ENST00000546596 285 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.67□□□□□ -1.98
PTPN4P29074 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.67□□□□□ -1.98
PTPN4P29074 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.67□□□□□ -1.98
PTPN4P29074 AL391261.3-201ENST00000557194 520 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AC109446.2-201ENST00000567872 497 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 MIR3616-201ENST00000584070 92 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
PTPN4P29074 AL359999.1-201ENST00000604513 294 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AC107294.1-201ENST00000609524 467 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AL355472.4-201ENST00000610233 626 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 FTX_3.1-201ENST00000610451 147 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 AC034102.8-201ENST00000615146 484 ntBASIC2.67□□□□□ -1.98
PTPN4P29074 RN7SL853P-201ENST00000617250 223 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms